genome.fa.s4621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004621.1 Hibiscus syriacus cultivar Beakdansim tig00010342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50015

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2091--2134	20	2.1	21	83	8	54	61	4	0	34	1.16
2373--2410	7	5.4	7	96	0	67	81	0	2	15	0.80
12111--12135	11	2.3	11	100	0	50	92	0	8	0	0.40
12169--12202	17	2.0	17	88	0	50	47	23	0	29	1.52
19309--19699	196	2.0	195	98	1	757	31	19	8	40	1.81
21470--21645	40	4.5	41	73	17	142	47	5	1	46	1.35
35178--35219	17	2.5	17	84	0	57	66	0	2	30	1.04
35524--35557	15	2.2	16	89	5	52	29	0	5	64	1.17
35520--35567	24	2.0	23	88	4	69	33	0	4	62	1.14
37522--37581	30	2.0	30	96	0	111	51	0	0	48	1.00
37522--37621	15	6.2	15	75	18	94	46	0	3	51	1.16
37674--38142	32	16.6	31	71	24	320	34	0	12	52	1.43
37679--38005	54	5.9	54	80	8	379	34	0	12	52	1.45
37732--38091	86	4.2	87	87	9	542	33	0	12	53	1.41
37605--38108	224	2.3	218	89	6	773	34	0	12	52	1.43
37733--38054	170	1.9	166	94	2	572	33	0	12	53	1.41
37962--38015	14	3.6	14	72	18	54	37	0	5	57	1.22
38016--38059	22	2.0	22	90	0	70	34	0	13	52	1.41
37989--38142	54	2.9	55	93	2	253	34	0	11	53	1.37
38071--38113	22	2.0	22	100	0	86	34	0	13	51	1.42
37777--38215	86	5.0	85	82	12	282	34	0	12	53	1.41
48981--49134	17	8.9	17	68	18	68	40	1	7	49	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49037--49202	5	31.6	5	72	16	97	37	2	5	54	1.37
48981--49185	56	3.8	53	75	17	174	40	2	6	50	1.42

Tables:   1

The End!