genome.fa.s4634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004634.1 Hibiscus syriacus cultivar Beakdansim tig00010374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73640

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5655--5702	19	2.6	19	93	3	80	33	2	10	54	1.46
6105--7851	199	8.8	200	85	4	2122	37	15	14	32	1.88
6105--7851	401	4.4	400	86	4	2256	37	15	14	32	1.88
6105--7851	599	2.9	601	88	3	2497	37	15	14	32	1.88
9341--9376	18	2.0	18	94	0	63	47	5	27	19	1.72
10686--10722	18	2.1	18	89	0	56	32	5	10	51	1.60
10678--10730	24	2.2	24	86	0	70	35	3	13	47	1.61
12003--12572	194	2.9	193	88	3	802	38	13	15	32	1.87
12907--12953	23	2.0	23	100	0	94	29	31	17	21	1.96
14203--14250	19	2.5	19	96	0	87	29	4	12	54	1.56
16733--17423	200	3.5	199	86	3	942	38	15	15	31	1.88
17452--17612	87	1.9	86	93	1	277	31	13	12	42	1.82
17527--17590	23	2.7	23	82	7	83	29	15	10	43	1.81
20674--20764	3	30.0	3	86	10	123	31	0	2	65	1.04
22082--22162	29	2.7	30	84	3	101	18	9	8	62	1.51
27030--27310	145	1.9	145	86	4	397	49	6	6	38	1.54
27190--27234	23	2.0	23	81	0	54	53	4	4	37	1.41
27592--27654	31	2.0	31	93	0	108	28	4	11	55	1.55
38845--38944	42	2.4	42	86	6	141	22	34	2	42	1.65
43312--43363	24	2.2	24	85	0	68	17	48	9	25	1.77
52048--53246	4	300.0	4	98	0	2233	24	1	25	48	1.59
61317--61358	15	2.7	15	82	14	50	45	2	2	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61358--61396	18	2.2	18	86	9	53	64	0	2	33	1.08
63207--63258	18	2.9	18	94	0	86	26	30	19	23	1.98

Tables:   1

The End!