genome.fa.s464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000464.1 Hibiscus syriacus cultivar Beakdansim tig00000860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130706

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2328--2363	17	2.1	17	94	0	63	19	0	0	80	0.71
6719--7278	167	3.3	168	80	5	609	28	19	18	32	1.96
7424--7521	33	3.0	33	84	3	117	17	20	14	47	1.82
8172--8236	6	10.8	6	77	12	71	33	0	16	49	1.47
8894--8979	41	2.1	42	82	10	106	34	9	17	38	1.82
9015--9087	38	1.9	38	88	5	112	63	10	1	24	1.35
9016--9076	17	3.4	17	68	16	50	62	13	1	22	1.39
11333--11406	39	1.9	39	83	5	98	58	2	0	39	1.13
11351--11458	19	5.4	19	68	15	65	58	1	0	39	1.09
11435--11482	13	3.6	13	83	5	60	54	0	0	45	0.99
11503--11616	39	2.6	46	73	22	118	64	0	0	34	0.99
15645--15705	21	2.9	21	85	0	68	44	11	16	27	1.82
15696--15741	21	2.2	22	80	11	60	41	10	17	30	1.84
24020--24384	131	2.8	131	84	1	471	33	10	17	38	1.84
32158--33413	135	9.3	135	81	3	1283	32	21	14	31	1.94
32162--33413	404	3.1	401	82	3	1430	32	21	14	31	1.94
35335--35407	18	3.9	18	72	13	67	23	20	28	27	1.99
45097--45136	21	1.9	21	84	0	53	32	2	32	32	1.71
52145--52192	2	24.5	2	91	4	80	45	2	0	52	1.12
54368--54679	122	2.5	124	85	8	422	33	9	17	39	1.82
56912--56939	14	2.0	14	100	0	56	42	7	7	42	1.59
56982--57011	15	2.0	15	93	0	51	40	3	6	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59394--59426	11	3.1	11	91	4	50	18	0	0	81	0.68
59399--59433	5	6.8	5	87	6	52	20	0	0	80	0.72
62257--62338	10	8.0	10	77	13	60	79	1	14	4	0.96
62257--62338	19	4.3	18	76	13	58	79	1	14	4	0.96
62268--62338	30	2.4	28	83	6	88	80	1	14	4	0.93
66612--66640	2	14.5	2	100	0	58	51	0	0	48	1.00
72188--72484	54	5.5	53	80	8	244	30	11	18	39	1.85
72188--72484	107	2.8	105	81	7	276	30	11	18	39	1.85
72223--72484	52	4.8	52	79	9	233	30	10	18	40	1.84
72997--73034	18	2.1	18	90	0	58	36	21	21	21	1.95
73593--74131	139	3.9	139	92	0	839	35	18	21	25	1.95
76747--76771	2	12.5	2	100	0	50	52	0	0	48	1.00
76903--76951	4	12.2	4	82	8	64	26	0	0	73	0.83
76897--76957	21	3.0	21	77	15	67	26	1	0	72	0.94
76897--76957	17	3.6	17	82	10	72	26	1	0	72	0.94
78715--78748	17	2.0	17	88	0	50	23	17	14	44	1.86
81811--81883	24	3.1	24	80	5	78	35	24	15	24	1.94
85920--85965	20	2.3	20	96	0	83	41	26	17	15	1.88
94734--94772	20	2.0	20	84	0	51	23	7	23	46	1.78
94944--95004	20	2.9	21	87	9	88	21	24	32	21	1.98
104425--104521	39	2.6	37	84	11	119	45	4	10	40	1.57
104534--104573	21	1.9	21	84	0	53	35	0	10	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104595--104639	23	2.0	23	82	8	56	22	4	0	73	1.01
110769--110989	121	1.8	121	86	0	316	27	14	27	31	1.95
110866--111181	139	2.3	139	82	1	373	26	15	26	31	1.96
112177--112223	7	6.9	7	76	13	53	0	17	0	82	0.66
112156--112231	22	3.4	22	82	12	75	6	14	0	78	0.93
114781--114838	20	2.7	20	78	10	62	27	20	18	32	1.97
117905--117937	17	2.1	17	88	11	52	54	0	21	24	1.45
121592--121714	64	2.0	60	84	6	156	53	9	4	32	1.52
127682--127751	25	2.8	25	97	0	131	41	21	11	25	1.86

Tables:   1

The End!