genome.fa.s4656.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004656.1 Hibiscus syriacus cultivar Beakdansim tig00010437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112941

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16742--16781	21	1.9	21	84	0	53	47	22	15	15	1.82
24406--24435	15	2.0	15	93	0	51	6	66	23	3	1.30
24550--24599	24	2.2	23	79	10	59	36	8	14	42	1.74
25721--25807	45	1.9	46	95	2	158	27	19	26	26	1.99
25827--25865	20	2.0	20	89	0	60	20	15	33	30	1.94
26200--26239	19	2.0	20	85	9	55	25	37	0	37	1.56
28513--28609	44	2.2	44	81	7	108	30	19	23	25	1.98
36218--36254	19	1.9	19	94	0	65	51	10	10	27	1.70
37271--37377	3	35.7	3	92	0	178	66	0	1	31	1.03
37627--38409	113	6.8	113	88	2	1075	28	19	14	37	1.91
37627--38380	229	3.3	227	88	3	1138	28	19	14	37	1.91
39052--39591	167	3.3	166	94	3	905	37	22	13	26	1.91
39051--39591	83	6.5	85	92	4	896	37	22	13	26	1.91
39051--39591	245	2.2	249	93	3	925	37	22	13	26	1.91
51112--51170	30	1.9	32	82	6	77	61	1	6	30	1.32
52778--52807	15	1.9	16	93	6	53	0	16	3	80	0.85
53292--53407	3	38.7	3	92	0	196	66	0	1	31	1.02
60909--61049	41	3.4	41	96	0	255	21	22	26	29	1.99
61129--61227	6	16.5	6	100	0	198	33	50	16	0	1.45
61865--62213	83	4.2	83	79	6	282	30	19	17	32	1.95
61865--62213	41	8.5	40	79	5	286	30	19	17	32	1.95
65680--65739	21	2.8	22	84	2	77	20	5	20	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65930--66116	43	4.4	43	84	4	182	26	25	19	28	1.99
66686--66771	41	2.1	41	95	0	154	27	24	23	24	2.00
71984--72020	16	2.3	16	95	0	65	37	13	21	27	1.91
72703--72829	58	2.2	58	94	0	218	41	6	16	35	1.74
73642--73784	72	2.0	72	93	1	243	38	2	2	55	1.29
73662--73783	36	3.4	36	75	8	140	37	2	3	56	1.29
73909--73939	2	16.0	2	93	6	55	51	0	0	48	1.00
73966--74032	27	2.4	27	85	2	80	34	4	1	59	1.26
75151--77115	983	2.0	982	97	0	3689	33	15	22	28	1.94
78734--78791	27	2.1	27	96	0	107	25	10	12	51	1.70
81378--81418	12	3.3	12	83	6	55	60	0	0	39	0.96
81379--81417	18	2.2	18	90	0	60	58	0	0	41	0.98
81492--81599	8	13.4	8	75	20	66	75	0	2	22	0.94
81491--81629	18	7.9	16	68	22	75	74	0	3	21	0.96
81490--81600	41	2.6	43	76	12	113	74	0	2	22	0.94
81490--81629	33	4.2	32	70	18	92	74	0	3	22	0.97
81490--81635	8	17.6	8	71	22	63	73	0	4	21	0.99
82204--82296	21	4.6	20	78	4	96	38	18	24	18	1.92
82201--82296	41	2.3	41	98	0	183	39	17	23	18	1.92
82204--82296	20	4.6	20	78	4	96	38	18	24	18	1.92
82285--82379	20	4.7	20	73	2	73	36	24	16	22	1.94
84202--84246	18	2.5	18	85	0	63	26	42	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84730--84849	18	6.9	19	70	16	66	43	21	21	13	1.87
84774--84863	14	5.9	14	73	19	81	47	24	18	8	1.77
84758--84849	18	5.5	17	70	20	70	45	22	20	10	1.82
84758--84868	32	3.4	32	92	1	186	46	23	19	9	1.80
84875--84996	19	6.6	19	76	11	101	13	20	23	41	1.88
84923--84977	20	2.8	19	89	5	83	16	25	23	34	1.95
86969--87045	14	4.7	15	74	22	59	45	19	22	12	1.84
86979--87045	18	3.8	19	81	18	92	46	17	22	13	1.83
88140--88207	24	2.8	24	81	0	73	29	16	17	36	1.92
88382--88406	12	2.1	12	100	0	50	72	0	28	0	0.86
90699--90763	19	3.7	19	70	19	68	43	20	24	12	1.86
90699--90761	33	1.9	33	96	0	117	41	20	25	12	1.88
90759--90801	20	2.2	20	87	4	61	16	18	23	41	1.89
90787--90820	14	2.4	14	85	0	50	8	23	20	47	1.78
90942--90978	14	2.6	14	91	0	65	45	24	0	29	1.53
92332--92398	21	3.2	21	68	4	55	19	20	35	23	1.95
92332--92454	42	2.9	41	80	7	113	22	17	36	22	1.95
94478--94576	33	3.0	33	89	1	144	39	26	23	11	1.88
94453--94675	19	12.1	19	79	11	232	44	21	21	12	1.85
94671--94741	19	3.7	19	84	1	79	11	19	23	45	1.83
95254--95301	20	2.4	20	85	0	69	25	16	27	31	1.97
95336--95431	41	2.3	41	98	0	147	18	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95336--95428	20	4.6	20	78	4	96	18	24	18	38	1.92
96439--96523	3	27.7	3	79	13	77	62	1	2	34	1.16
96528--96989	39	12.2	37	74	18	352	45	8	2	44	1.45
96538--96842	77	4.2	72	75	18	308	44	8	1	44	1.45
96548--96842	37	8.0	37	80	14	308	44	8	2	45	1.45
96525--96841	147	2.1	146	85	7	417	44	9	1	43	1.47
96828--96892	2	32.5	2	100	0	130	49	0	0	50	1.00
96571--97030	147	3.1	148	82	12	452	45	6	2	46	1.42
96571--97030	145	3.1	146	82	12	439	45	6	2	46	1.42
96876--96989	38	3.1	37	82	9	128	42	7	3	45	1.50
96874--97005	38	3.4	38	76	18	114	43	7	3	46	1.47
96957--96983	13	2.1	13	100	0	54	48	7	0	44	1.31
96986--97030	2	23.0	2	86	13	67	48	2	0	48	1.13
97636--97958	85	3.8	85	86	1	396	24	18	21	34	1.96
99295--99334	20	2.0	20	95	0	71	32	20	12	35	1.90
99346--99547	99	2.0	99	89	0	305	31	18	15	34	1.92
109672--109724	17	3.5	15	76	16	56	60	0	3	35	1.15
110933--110999	29	2.3	27	82	12	80	65	0	5	28	1.16
111087--111127	2	21.0	2	85	5	57	43	2	0	53	1.13
111109--111266	73	2.2	73	86	8	223	44	7	1	45	1.43
111215--111363	33	4.6	33	78	13	157	38	11	5	44	1.63
111228--111363	30	4.3	31	77	17	136	38	11	5	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111216--111363	61	2.3	66	83	11	198	38	11	5	44	1.64
111215--111387	33	5.1	37	78	17	132	38	12	5	43	1.64

Tables:   1

The End!