genome.fa.s4704.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004704.1 Hibiscus syriacus cultivar Beakdansim tig00010573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116691

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14530--15319	51	15.1	55	90	3	436	29	26	15	29	1.96
14610--15329	51	13.9	51	92	2	1005	29	26	14	29	1.95
14667--15351	252	2.7	251	89	3	850	28	27	14	29	1.95
16471--16614	16	8.6	16	76	16	105	5	18	1	75	1.07
16525--16624	9	11.1	9	70	20	59	5	17	2	76	1.06
16543--16621	17	4.5	17	81	13	63	6	15	2	75	1.10
16475--16607	7	18.1	7	70	18	58	6	18	1	74	1.10
26264--26360	44	2.2	45	88	3	142	39	21	11	27	1.88
30815--30863	23	2.1	24	88	3	73	30	26	18	24	1.98
31591--31686	19	4.7	20	81	13	74	23	27	18	30	1.98
31637--31688	19	2.7	19	100	0	104	21	30	17	30	1.96
34906--35077	60	2.9	60	84	6	206	22	25	23	29	1.99
35148--35195	24	2.0	24	87	0	69	20	27	31	20	1.98
35518--35648	33	4.0	33	83	0	154	27	49	9	13	1.72
41551--41575	12	2.1	12	100	0	50	8	0	32	60	1.26
54656--54710	22	2.5	22	85	8	69	25	20	10	43	1.84
55313--55361	21	2.3	21	78	3	53	57	12	0	30	1.36
56107--56244	64	2.2	63	83	7	163	27	15	25	31	1.96
63285--63462	65	2.8	64	81	6	200	27	16	25	29	1.97
63303--63462	65	2.5	65	84	7	202	28	15	25	30	1.96
64690--64744	26	2.1	27	89	3	85	54	5	1	38	1.34
66637--66675	17	2.4	17	95	4	71	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69147--69222	36	2.1	36	85	7	100	47	1	3	47	1.29
69368--69405	20	1.9	20	88	0	58	21	26	10	42	1.85
71115--71184	21	3.4	21	86	2	88	25	22	20	31	1.98
71400--71650	96	2.6	97	86	3	319	50	8	9	31	1.65
79131--79172	21	2.0	21	85	4	57	30	14	14	40	1.85
80406--80475	21	3.4	21	88	4	106	8	38	20	32	1.83
96141--96215	2	37.5	2	100	0	150	49	0	0	50	1.00
97517--97654	64	2.2	64	82	2	161	27	18	27	26	1.98
97960--98652	212	3.3	215	89	3	1064	50	8	11	29	1.68
97960--98665	210	3.3	209	88	5	971	50	8	12	28	1.68
98738--98805	20	3.3	20	74	12	66	48	4	4	42	1.43
98735--98816	42	1.9	44	90	5	132	47	3	4	43	1.42
98754--98814	20	3.0	20	75	17	70	45	4	6	42	1.51
98811--98871	27	2.2	28	88	2	88	44	9	4	40	1.59
99011--99132	53	2.3	52	90	2	183	39	8	6	45	1.60
99094--99166	2	35.0	2	74	17	60	43	4	2	49	1.36
99094--99389	20	15.3	20	64	23	100	46	6	3	43	1.44
99043--99294	53	4.8	53	72	15	177	45	7	3	43	1.49
99120--99188	34	2.0	36	85	5	97	46	7	2	43	1.46
99256--99382	60	2.1	62	86	2	177	48	5	3	42	1.42
99271--99472	33	6.3	34	74	17	189	46	6	4	43	1.49
99256--99382	62	2.1	59	82	7	157	48	5	3	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99248--99565	18	17.7	18	66	19	141	45	6	5	42	1.53
99271--99472	95	2.1	96	82	11	236	46	6	4	43	1.49
99476--99594	18	6.4	20	72	20	80	41	9	7	42	1.65
99476--99594	38	3.2	38	79	13	124	41	9	7	42	1.65
99520--99592	18	3.9	18	81	13	85	39	9	6	43	1.64
100446--100548	45	2.3	45	98	0	197	33	20	16	30	1.95
101420--101634	102	2.1	101	93	2	369	26	13	23	36	1.92
101640--101717	23	3.3	23	77	8	86	24	19	23	33	1.97
106326--106482	64	2.5	64	75	9	158	33	21	19	26	1.96
107262--107479	103	2.1	103	95	1	402	25	13	23	37	1.91
107489--107563	23	3.3	23	75	10	66	25	20	22	32	1.98
112146--112299	64	2.5	61	78	8	166	31	21	20	26	1.98
113305--113367	23	2.8	22	82	4	63	23	25	23	26	2.00
113304--113367	22	2.8	23	76	4	67	23	25	23	28	2.00
114201--114282	20	3.9	22	78	16	86	43	7	1	47	1.38
114204--114541	18	18.7	18	68	19	100	45	6	3	44	1.46
114202--114490	2	142.0	2	64	22	70	46	6	2	44	1.43
114465--114574	51	2.2	50	91	1	184	43	6	6	43	1.55
114515--114624	33	3.4	32	77	7	123	41	7	8	42	1.62
114396--114574	18	10.4	18	69	16	110	45	6	5	43	1.52
114415--114606	83	2.3	85	83	5	239	43	6	6	42	1.57
114671--114735	19	3.5	18	75	19	62	38	9	6	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114681--114735	20	2.8	21	74	25	66	40	10	5	43	1.63
114732--114788	30	1.9	29	92	3	96	42	10	5	42	1.62
114202--114826	18	37.0	16	64	24	68	43	7	4	44	1.53
114926--114958	9	3.7	9	84	15	50	54	6	0	39	1.25
114919--115210	18	17.2	18	69	18	162	43	7	6	42	1.57
114924--115212	51	5.7	50	76	10	200	43	7	6	42	1.57
114924--115051	53	2.5	51	87	2	175	45	6	4	43	1.50
114992--115083	33	2.7	34	85	9	118	42	6	6	44	1.56
114942--115167	86	2.7	84	86	3	303	42	7	7	42	1.59
115076--115193	33	3.6	33	78	6	141	42	7	7	42	1.62
115306--115419	59	2.0	58	91	6	187	41	5	11	42	1.63
115645--115834	93	2.0	91	81	7	213	32	30	6	31	1.82
115917--115986	29	2.4	29	92	2	122	27	41	2	28	1.70
116088--116130	19	2.2	20	83	4	52	46	30	4	18	1.69
116354--116378	2	12.5	2	100	0	50	52	0	0	48	1.00
116377--116516	31	4.6	31	88	5	207	21	3	25	49	1.65
116377--116516	60	2.3	62	86	7	216	21	3	25	49	1.65

Tables:   1

The End!