genome.fa.s4771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004771.1 Hibiscus syriacus cultivar Beakdansim tig00010754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97958

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3129--3215	40	2.1	41	85	4	122	20	9	33	36	1.85
6814--6854	2	20.5	2	100	0	82	51	0	0	48	1.00
10424--10581	86	1.8	86	87	2	237	25	12	24	37	1.90
16815--17187	170	2.2	169	89	5	551	41	20	13	24	1.89
16897--17207	163	1.9	166	90	4	502	42	22	12	22	1.87
24830--24859	2	15.0	2	100	0	60	50	0	0	50	1.00
25835--25863	15	1.9	15	100	0	58	41	13	37	6	1.72
25991--26194	97	2.1	97	96	1	374	28	14	16	40	1.88
27127--27159	2	16.5	2	100	0	66	48	0	0	51	1.00
33391--33563	86	2.0	86	98	0	337	46	10	2	39	1.52
34655--34755	50	2.0	50	98	0	193	41	12	15	29	1.85
35551--35654	52	2.0	52	92	0	172	37	14	14	33	1.87
37411--37540	60	2.2	59	83	6	158	40	6	24	27	1.81
37440--37570	60	2.2	60	81	2	156	40	6	22	30	1.80
38062--38180	42	2.9	42	93	1	204	16	20	18	44	1.87
38389--38454	15	4.1	15	69	11	51	51	1	0	46	1.10
38369--38428	21	2.9	22	80	11	65	48	0	0	51	1.00
38421--38466	18	2.6	19	83	10	53	54	4	2	39	1.32
38380--38537	28	5.4	29	72	17	96	45	1	1	51	1.20
38706--38775	20	3.5	20	96	0	131	35	14	10	40	1.79
38706--38784	40	2.0	40	89	0	122	35	15	8	40	1.78
38758--38824	15	4.5	15	84	3	91	34	19	7	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38758--38829	30	2.4	30	97	2	137	31	19	6	41	1.78
39101--39134	17	1.9	18	94	5	61	41	0	0	58	0.98
40328--40357	2	15.0	2	100	0	60	50	0	0	50	1.00
42613--42662	2	25.0	2	84	8	66	44	2	2	52	1.24
42707--42744	18	2.1	19	85	5	51	21	5	2	71	1.19
47160--47214	2	28.0	2	82	10	69	52	1	1	43	1.22
49587--49831	105	2.3	108	80	6	282	25	21	15	37	1.93
51082--51171	17	4.9	18	82	16	89	10	11	0	78	0.95
51109--51159	10	5.4	10	81	13	72	7	9	0	82	0.85
51100--51171	27	2.7	27	87	8	103	9	9	0	80	0.91
51109--51171	8	7.1	9	77	10	51	9	9	0	80	0.89
59772--59883	35	3.2	35	87	0	161	41	23	0	33	1.60
61943--62052	35	3.1	35	86	0	148	34	0	20	43	1.59
62483--63057	112	5.1	112	92	0	916	46	13	14	25	1.81
62930--63380	182	2.5	182	91	0	733	43	13	16	26	1.85
64116--64223	21	5.2	21	77	4	130	39	16	25	17	1.91
64116--64239	21	6.0	21	76	5	119	42	16	23	17	1.88
64117--64241	41	3.0	41	95	3	216	42	16	24	16	1.88
64237--64286	20	2.5	20	87	6	66	30	28	16	26	1.96
64474--64517	22	2.0	22	95	0	79	20	45	15	18	1.85
66138--66182	18	2.5	18	88	0	72	26	44	15	13	1.83
66655--66721	20	3.4	20	83	2	82	40	23	20	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66693--66784	33	2.8	34	87	11	129	46	20	18	14	1.83
66710--66767	14	3.9	14	77	16	62	48	22	17	12	1.80
66694--66784	32	2.8	33	93	3	157	47	20	18	13	1.82
66815--66895	19	4.3	19	79	4	83	14	20	22	41	1.89
68917--69022	19	5.8	19	91	8	177	47	16	21	14	1.82
69041--69098	20	2.9	20	92	0	89	18	22	20	37	1.94
69720--69786	21	3.2	21	68	4	55	19	20	35	23	1.95
69720--69842	42	2.9	41	80	7	113	22	17	36	22	1.95
71841--71901	20	3.1	19	79	9	68	44	18	24	13	1.85
71866--71962	33	2.9	33	89	1	140	40	24	23	11	1.88
71963--72043	19	4.5	19	74	16	73	11	17	24	46	1.80
72588--72688	20	4.9	21	71	12	59	18	19	18	42	1.89
72551--72644	20	4.7	20	80	2	89	23	18	24	34	1.96
72572--72706	41	3.3	41	82	4	139	19	21	20	38	1.94
72633--72725	20	4.6	20	78	4	96	17	24	18	39	1.91
72633--72725	41	2.3	41	100	0	186	17	24	18	39	1.91
73009--73054	23	2.0	23	86	0	65	36	17	8	36	1.81
74647--75670	147	7.0	147	78	5	987	32	12	12	42	1.79

Tables:   1

The End!