genome.fa.s4797.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004797.1 Hibiscus syriacus cultivar Beakdansim tig00010808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140543

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128--1162	2	18.0	2	94	5	63	48	0	0	51	1.00
2301--4498	552	4.0	555	96	2	4004	31	14	16	37	1.89
6321--6367	21	2.2	21	80	0	58	36	19	12	31	1.89
6613--6637	3	8.3	3	100	0	50	32	0	0	68	0.90
6801--6849	17	2.9	17	76	11	55	59	0	4	36	1.17
8114--8154	22	1.9	21	90	5	64	24	0	2	73	0.96
13564--13617	3	17.7	3	88	3	54	42	0	0	57	0.98
15694--15745	16	3.2	16	78	19	54	23	1	3	71	1.13
21611--22112	246	2.0	247	93	1	853	31	14	19	34	1.92
22026--22121	42	2.3	42	83	1	122	26	18	22	32	1.97
22544--22573	3	9.7	3	92	7	51	30	0	3	66	1.07
22820--22895	22	3.5	22	83	0	98	21	27	26	25	1.99
32644--32706	31	2.0	31	96	0	117	33	17	14	34	1.90
32890--32918	15	1.9	15	100	0	58	34	13	17	34	1.89
34230--34289	29	2.0	31	87	6	88	35	6	15	43	1.72
35090--35148	29	2.0	31	90	6	95	38	3	15	42	1.63
35378--35419	21	2.0	21	95	0	75	23	21	28	26	1.99
35448--35487	20	1.9	22	90	10	66	37	40	10	12	1.77
35701--35770	34	2.1	32	86	5	95	32	15	30	21	1.94
36494--36535	21	2.0	21	90	0	66	26	14	28	30	1.95
36565--36604	20	1.9	22	90	10	66	37	40	10	12	1.77
36818--36887	34	2.1	32	86	5	95	31	15	30	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43473--43506	12	2.9	11	87	12	50	70	0	2	26	1.01
44010--44064	21	2.6	21	85	0	74	20	25	18	36	1.94
44052--44122	20	3.5	20	100	0	142	33	21	21	23	1.97
44714--44762	20	2.5	20	83	6	64	36	24	18	20	1.94
44806--44873	20	3.4	20	87	4	84	16	14	25	44	1.85
46760--46883	20	6.5	20	81	10	161	39	20	19	20	1.93
46783--46904	34	3.4	34	79	12	145	40	19	20	18	1.91
46760--46904	74	2.0	74	92	0	245	40	20	20	19	1.91
46930--46976	20	2.3	20	88	0	67	21	19	23	36	1.95
46950--47031	33	2.5	33	81	2	101	13	18	21	46	1.83
47527--47631	21	5.0	21	74	3	95	20	37	19	22	1.95
47524--47634	42	2.6	42	78	5	118	20	37	18	22	1.94
48986--49021	14	2.6	14	90	0	54	30	0	22	47	1.52
49134--49216	33	2.5	33	90	2	121	45	18	21	14	1.84
49156--49223	19	3.8	19	70	21	74	47	17	20	14	1.83
49227--49314	19	4.8	19	77	16	105	15	20	17	46	1.84
49324--49377	20	2.7	20	85	2	72	22	22	20	35	1.96
49341--49392	20	2.6	20	87	6	70	21	15	23	40	1.91
49359--49401	20	2.2	20	82	0	50	27	9	23	39	1.85
51823--51874	24	2.2	24	82	6	61	36	17	19	26	1.94
52722--52810	20	4.4	20	91	4	126	24	19	16	39	1.92
53728--53925	75	2.6	75	82	4	231	52	13	5	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53845--53873	12	2.5	12	94	5	51	62	10	0	27	1.28
54144--54187	21	2.1	21	95	0	79	27	31	4	36	1.77
55030--55068	20	2.0	20	94	0	69	17	15	35	30	1.91
62099--62420	36	9.3	36	79	12	291	47	5	16	30	1.69
62099--62420	71	4.7	72	77	14	327	47	5	16	30	1.69
62313--62361	24	2.0	24	92	0	80	38	2	24	34	1.67
62277--62395	60	2.0	60	91	0	193	43	4	20	31	1.71
62241--62420	96	1.9	96	92	0	306	46	5	18	29	1.71
62650--62703	22	2.5	22	96	0	99	35	16	11	37	1.84
62672--62866	73	2.7	73	90	0	311	40	16	10	32	1.83
66437--66468	16	2.0	16	93	0	55	37	15	25	21	1.93
68665--68695	2	16.0	2	93	6	55	51	0	0	48	1.00
70872--70909	19	2.0	20	85	10	53	42	0	7	50	1.31
73681--73722	16	2.6	17	78	21	54	52	2	2	42	1.27
73666--73782	37	3.1	37	76	10	121	43	5	5	45	1.50
73903--73958	5	11.0	5	83	9	53	17	1	1	78	0.92
73911--73958	11	4.2	12	82	12	57	14	2	2	81	0.88
73911--73975	29	2.2	28	84	7	85	16	4	1	76	1.02
73903--73984	35	2.4	35	80	10	89	19	4	1	74	1.07
73908--73975	30	2.4	28	81	13	84	17	4	1	76	1.03
74404--74451	21	2.3	21	79	17	55	33	20	27	18	1.96
74414--74462	21	2.3	21	92	0	80	28	16	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74926--74973	26	1.9	25	87	8	71	22	0	31	45	1.53
96247--96413	87	1.9	85	80	9	194	43	7	7	41	1.59
96333--96470	37	3.7	36	79	10	143	44	5	7	42	1.55
110132--110425	157	1.9	154	92	3	491	34	13	21	31	1.92
112117--112142	13	2.0	13	100	0	52	46	7	23	23	1.78
119034--119062	14	2.0	15	93	6	51	55	13	17	13	1.70
121385--121435	26	2.0	26	84	0	66	50	1	1	45	1.24
121456--121537	24	3.5	24	74	14	73	45	7	3	43	1.49
124719--124744	13	2.0	13	100	0	52	61	0	0	38	0.96
125592--125627	14	2.5	15	95	4	65	41	0	0	58	0.98
125592--125634	14	3.0	14	83	12	52	39	0	0	60	0.97
125629--125683	23	2.4	24	82	14	71	52	1	0	45	1.11
125706--125763	20	3.1	17	73	22	53	56	0	5	37	1.21
125846--125903	29	2.0	29	83	12	75	51	1	0	46	1.11
125861--125962	49	2.1	48	82	10	120	54	2	0	42	1.15
125881--125961	34	2.4	33	80	10	94	55	2	0	41	1.13
127394--127444	20	2.5	20	78	12	59	23	0	1	74	0.92
129898--130113	107	2.0	107	99	0	423	37	11	15	34	1.84
131118--131169	17	3.2	17	75	10	54	50	13	3	32	1.60
134342--134370	2	14.5	2	100	0	58	51	0	0	48	1.00
134480--134567	28	3.1	28	87	6	133	30	14	10	44	1.79
135744--135820	15	5.1	15	74	12	68	24	1	12	61	1.40

Tables:   1

The End!