genome.fa.s4798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004798.1 Hibiscus syriacus cultivar Beakdansim tig00010811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85723

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7330--7488	79	2.0	79	96	2	293	23	10	28	37	1.87
8140--8313	56	3.1	55	86	1	224	39	13	14	32	1.85
12582--12745	59	2.9	55	77	8	159	39	14	15	30	1.87
14948--14996	20	2.5	20	80	10	55	42	16	2	38	1.60
23352--23408	28	2.0	28	100	0	114	45	12	10	31	1.76
27673--27715	22	2.0	22	100	0	86	32	9	4	53	1.53
30093--30159	32	2.1	32	100	0	134	28	11	17	41	1.85
33214--33271	29	2.0	29	86	6	82	13	34	27	24	1.93
33316--33375	14	3.9	14	76	23	66	23	38	30	8	1.84
33310--33375	34	1.9	34	96	0	123	22	37	28	10	1.88
33328--33361	10	3.4	10	84	15	52	23	38	29	8	1.85
33362--33432	33	2.2	33	89	0	106	28	28	33	9	1.89
33440--33495	29	1.9	29	88	0	85	23	30	33	12	1.92
33563--33639	29	2.7	29	93	0	127	23	27	33	15	1.95
34393--34450	24	2.4	24	85	0	80	12	12	18	56	1.65
34902--35030	19	7.3	19	73	17	116	9	17	27	45	1.78
34902--34993	33	2.8	33	93	3	150	7	18	28	45	1.76
34902--35030	52	2.5	51	74	12	127	9	17	27	45	1.78
35078--35360	93	3.1	93	98	0	541	46	19	12	22	1.83
37066--37122	14	3.7	14	75	20	60	42	24	24	8	1.83
37058--37144	33	2.6	33	96	0	165	45	20	24	9	1.80
37080--37162	19	4.7	19	77	15	88	45	21	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37174--37230	14	3.7	14	75	20	60	8	24	22	43	1.81
37158--37238	33	2.5	33	95	0	144	8	22	22	46	1.78
37215--37290	21	3.7	21	83	3	109	11	25	17	46	1.82
37214--37291	41	1.9	41	97	0	147	12	25	16	44	1.83
37370--37440	33	2.2	33	89	0	106	49	18	21	11	1.78
37622--37676	22	2.5	22	81	0	74	20	16	40	23	1.91
37823--37996	20	8.6	20	83	5	217	19	19	26	34	1.96
37825--37996	60	2.8	60	84	0	245	19	19	26	34	1.96
38010--38127	21	5.7	21	70	6	80	21	16	26	35	1.95
40206--40278	29	2.5	29	91	4	112	19	34	27	19	1.96
40318--40373	29	1.9	29	100	0	112	10	39	30	19	1.86
40377--40426	23	2.2	23	85	7	66	8	38	26	28	1.84
40442--40479	20	1.9	20	94	0	67	13	28	34	23	1.92
40518--40575	29	2.0	29	89	0	89	22	27	36	13	1.92
41093--41189	38	2.5	38	89	1	158	48	4	1	46	1.28
41152--41205	29	1.9	29	85	7	76	44	1	3	50	1.30
45815--45846	16	2.0	16	93	0	55	34	6	25	34	1.81
46596--46628	15	2.1	16	88	5	50	51	15	24	9	1.72
51206--51253	21	2.3	20	85	3	60	58	0	2	39	1.10
52503--52543	8	5.9	7	91	8	50	41	0	0	58	0.98
52715--52746	2	16.5	2	93	6	57	50	0	0	50	1.00
69690--69746	23	2.5	23	85	5	71	19	7	12	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69754--69833	23	3.4	23	73	19	83	12	11	17	58	1.62
69755--69796	11	3.7	11	79	14	50	11	9	16	61	1.55
70631--70700	37	1.9	36	85	8	97	48	4	0	47	1.21
77442--77539	40	2.5	40	90	5	155	32	42	7	17	1.76
77463--77529	22	3.2	22	60	23	54	31	43	7	17	1.77
83600--83635	16	2.2	16	100	0	72	22	16	30	30	1.96

Tables:   1

The End!