Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004821.1 Hibiscus syriacus cultivar Beakdansim tig00010865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  427682

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284182--284260
31
2.5
31
95
0
140
58
2
0
39
1.12
290967--291045
31
2.6
30
84
6
104
41
13
11
32
1.81
297874--297921
23
2.1
23
88
7
71
56
0
0
43
0.99
297884--297930
23
2.0
23
83
4
58
59
0
0
40
0.97
302722--302751
14
2.1
14
93
0
51
16
3
16
63
1.44
310822--310867
15
3.4
14
80
13
53
65
2
0
32
1.05
312215--312259
21
2.1
21
88
8
65
17
17
6
57
1.60
319708--319770
32
2.0
32
93
0
108
34
6
9
49
1.61
322181--322233
2
27.0
2
94
3
90
47
0
0
52
1.00
323762--323805
21
2.1
21
100
0
88
43
9
9
38
1.68
325249--325280
14
2.1
16
88
11
50
43
0
6
50
1.27
330293--330375
29
2.8
29
92
1
139
43
9
14
32
1.78
335060--335142
29
2.8
29
92
1
139
43
9
14
32
1.78
335198--335222
2
12.5
2
100
0
50
52
0
0
48
1.00
336069--336115
24
2.0
24
95
0
85
34
8
8
48
1.64
339096--339154
28
2.1
28
83
0
73
37
3
18
40
1.68
340957--341009
27
2.0
27
88
0
79
39
11
9
39
1.74
341643--341695
20
2.7
20
82
11
65
62
3
7
26
1.39
344177--344213
19
2.0
18
94
5
65
45
27
5
21
1.73
344991--345068
7
11.3
7
81
2
77
39
37
1
21
1.62
344991--345065
20
3.7
19
77
13
78
40
37
1
21
1.62
345503--345572
36
1.9
36
85
5
97
32
27
0
40
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
346075--346131
29
2.0
29
92
0
96
29
19
10
40
1.85
349378--349408
14
2.2
14
100
0
62
16
41
6
35
1.74
373535--373585
24
2.1
24
85
0
66
56
11
5
25
1.57
374671--374772
21
4.8
21
73
17
86
25
0
26
47
1.59
374671--374772
7
14.4
7
76
12
77
25
0
26
47
1.59
376156--376624
231
2.0
231
100
0
938
33
14
18
33
1.91
377821--377846
2
13.0
2
100
0
52
0
50
0
50
1.00
382420--382478
21
2.8
21
77
12
66
30
16
20
32
1.95
384975--385013
18
2.2
18
90
0
60
33
15
17
33
1.92
388191--388264
37
2.0
37
84
10
98
45
0
4
50
1.20
390638--390678
5
8.2
5
94
0
73
41
2
0
56
1.13
391955--391989
5
7.0
5
100
0
70
40
0
0
60
0.97
392402--392428
14
1.9
14
100
0
54
14
22
0
62
1.31
392490--392552
22
2.8
22
76
16
67
7
26
0
65
1.20
393099--393138
22
1.9
20
85
10
53
52
5
0
42
1.23
394747--394796
19
2.6
19
93
0
82
26
14
22
38
1.91
394805--394838
17
2.0
17
100
0
68
23
17
17
41
1.90
395920--395981
29
2.1
29
90
0
97
53
16
17
12
1.73
397028--397074
21
2.2
22
78
17
55
48
25
0
25
1.51
406440--406478
16
2.5
16
91
4
62
35
2
23
38
1.68
407971--408015
20
2.2
21
88
11
67
31
4
15
48
1.65
409287--409400
20
5.7
20
82
6
104
31
24
18
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
409284--409400
61
1.9
61
85
0
162
33
23
17
24
1.97
410002--410164
19
8.7
19
80
10
165
12
19
22
45
1.84
410002--410164
39
4.3
38
77
10
156
12
19
22
45
1.84
411475--411519
21
2.2
21
84
11
58
35
2
15
46
1.58
412790--412903
20
5.7
20
82
6
104
31
24
18
25
1.97
412787--412903
61
1.9
61
85
0
162
33
23
17
24
1.97
413500--413662
19
8.7
19
80
10
165
12
19
22
45
1.84
413500--413662
39
4.3
38
77
10
156
12
19
22
45
1.84
415663--415747
43
2.0
43
83
0
107
21
40
17
21
1.92
417125--417160
14
2.6
14
95
0
63
30
0
25
44
1.54
417305--417455
19
8.7
19
64
21
71
15
22
20
41
1.90
417309--417435
33
3.9
32
85
8
184
15
22
19
41
1.89
417302--417434
66
2.0
66
95
0
239
17
22
19
40
1.91
418405--418447
21
2.0
21
86
0
59
30
27
25
16
1.97
418427--418580
69
2.2
68
86
5
204
31
26
27
14
1.95
418882--418953
29
2.5
29
90
0
108
38
11
12
37
1.79
418967--419044
30
2.6
29
80
8
84
34
8
20
35
1.84
419245--419311
22
3.0
22
100
0
134
19
26
26
26
1.99
425297--425338
21
2.0
21
86
4
59
30
28
23
16
1.96
425318--425471
67
2.2
69
84
7
190
31
27
25
15
1.96
425776--425845
27
2.5
29
88
4
99
40
11
11
37
1.77
426136--426199
21
3.0
21
97
0
119
20
28
25
26
1.99

Tables:   1   2

The End!