Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004822.1 Hibiscus syriacus cultivar Beakdansim tig00010867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  272678

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187226--187427
106
1.9
105
97
1
386
43
22
4
29
1.74
190265--190305
14
2.9
14
80
20
50
19
9
0
70
1.14
192146--192201
24
2.3
25
87
3
78
50
10
8
30
1.68
193040--193122
44
1.9
43
82
7
105
26
1
10
61
1.36
193119--193158
21
1.9
22
85
10
57
25
5
10
60
1.49
194049--194073
12
2.1
12
100
0
50
32
0
0
68
0.90
194620--194717
24
3.8
25
79
17
96
42
5
0
52
1.23
194648--194737
27
3.4
28
79
16
77
40
4
0
55
1.20
194774--194839
25
2.7
24
81
6
78
54
0
6
39
1.25
194819--194911
31
2.9
33
76
12
104
54
3
5
36
1.39
202588--202633
24
1.9
24
82
8
58
39
17
6
36
1.76
207054--207153
35
2.7
35
86
6
119
38
15
16
31
1.89
209847--209886
18
2.2
18
100
0
80
20
32
12
35
1.90
210407--210445
8
5.0
8
84
6
53
10
17
12
58
1.61
211573--211634
23
2.7
22
80
9
72
79
6
14
0
0.93
211573--211641
20
3.2
20
82
10
66
79
5
13
1
0.97
212248--212298
22
2.3
22
96
0
93
35
27
11
25
1.91
212695--212730
18
2.0
18
88
0
54
19
8
30
41
1.81
213235--213281
21
2.2
21
88
0
67
29
17
10
42
1.82
213317--213435
36
3.3
36
80
12
127
23
19
14
42
1.87
214108--214770
109
6.3
105
80
7
620
32
25
20
21
1.98
215231--215330
35
2.7
35
86
6
119
38
15
16
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
215755--215799
2
22.5
2
95
0
81
46
0
0
53
1.00
215861--215898
20
1.9
20
88
0
58
26
7
2
63
1.35
215909--215943
16
2.1
18
89
10
56
25
8
0
65
1.21
216673--216736
34
1.9
33
90
3
101
42
25
6
26
1.78
216706--216752
24
2.0
24
87
8
69
38
23
6
31
1.80
219319--219764
239
1.9
238
90
5
720
39
17
14
28
1.89
219558--220191
269
2.4
263
90
5
998
39
20
11
27
1.88
224481--224549
21
3.3
21
95
0
120
24
33
13
28
1.93
228528--228567
14
2.9
14
88
0
62
37
17
10
35
1.83
234301--234352
19
2.7
19
100
0
104
26
23
23
26
2.00
237353--237420
20
3.4
20
66
22
61
30
14
19
35
1.92
239777--239832
20
2.8
20
100
0
112
19
21
23
35
1.96
241004--241032
2
15.0
2
92
7
51
48
0
0
51
1.00
242259--242300
2
21.5
2
95
4
77
50
0
0
50
1.00
242444--242476
16
2.1
16
100
0
66
12
0
6
81
0.85
252936--252977
13
3.2
13
87
12
59
83
0
14
2
0.75
252936--252976
19
2.1
20
86
13
59
82
0
14
2
0.76
253848--253983
60
2.4
56
81
6
157
38
19
15
27
1.91
253961--254272
121
2.5
124
85
4
416
34
25
17
22
1.95
256139--256172
2
17.5
2
93
6
61
50
0
0
50
1.00
258215--258262
25
1.9
25
86
0
69
20
8
16
54
1.68

Tables:   1   2

The End!