genome.fa.s4829.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004829.1 Hibiscus syriacus cultivar Beakdansim tig00010877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  271781

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182370--182422	21	2.6	19	78	18	54	3	50	3	41	1.38
182456--182506	26	2.0	26	85	14	70	17	35	0	47	1.48
182491--182539	24	2.0	26	88	8	75	16	26	0	57	1.40
182616--182676	2	30.5	2	84	0	77	3	49	3	44	1.35
183066--183126	24	2.4	26	81	5	72	16	45	3	34	1.63
183068--183127	26	2.3	26	80	5	68	15	46	3	35	1.62
183101--183145	18	2.5	17	83	16	56	15	48	2	33	1.57
183101--183149	20	2.5	20	86	0	71	16	48	2	32	1.57
183562--183596	2	17.5	2	87	0	52	2	51	0	45	1.16
183650--183726	35	2.2	35	83	0	91	9	38	1	50	1.42
183838--183922	38	2.2	38	86	12	113	9	40	3	47	1.53
184225--184340	2	57.5	2	69	14	60	5	44	4	45	1.45
184918--184967	20	2.5	20	83	0	64	12	46	4	38	1.60
185139--185199	22	2.7	23	77	7	72	16	39	1	42	1.58
185166--185224	26	2.3	26	81	0	64	13	40	3	42	1.61
185715--185767	26	2.0	27	85	7	72	5	49	1	43	1.37
185820--185972	12	12.8	12	70	16	79	10	40	0	49	1.37
185899--185989	33	2.8	33	88	8	125	5	37	1	56	1.30
185900--185973	2	36.5	2	74	17	55	5	39	0	55	1.23
186550--186624	34	2.2	33	90	6	116	9	42	2	45	1.50
186552--186608	17	3.4	17	66	9	53	7	40	3	49	1.47
186832--186872	16	2.4	17	80	19	50	4	51	4	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186832--186874	18	2.5	17	81	7	52	6	51	4	37	1.50
186968--187024	30	1.9	30	85	0	78	8	26	3	61	1.42
186990--187046	27	2.2	26	83	3	69	10	33	0	56	1.34
187278--187327	22	2.3	22	85	0	64	14	48	0	38	1.44
187516--187581	26	2.5	26	82	0	78	7	39	1	51	1.40
187541--187575	18	1.9	18	94	0	61	2	42	2	51	1.31
187600--187638	14	2.8	13	85	11	51	7	46	7	38	1.61
187706--187750	22	2.0	22	83	8	56	4	35	4	55	1.40
187868--188275	2	205.0	2	70	7	141	7	45	5	41	1.56
196378--196480	35	2.9	36	67	18	88	31	19	19	30	1.96
196378--196518	71	2.0	71	84	2	185	31	17	19	31	1.95
199779--199808	5	6.0	5	100	0	60	0	80	0	20	0.72
203065--203328	136	1.9	141	82	4	340	34	12	22	31	1.91
206379--206444	32	2.1	32	88	0	96	24	15	21	39	1.91
212525--212558	16	2.1	16	94	0	59	32	26	8	32	1.87
216093--216127	2	17.5	2	93	0	61	0	0	45	54	0.99
218850--218963	50	2.3	50	95	0	201	25	17	19	37	1.93
241601--241674	16	4.6	16	96	0	139	39	6	29	24	1.81
251515--251570	23	2.4	23	81	0	58	50	5	7	37	1.53
255821--255853	2	16.5	2	100	0	66	51	0	0	48	1.00
258564--258615	17	2.8	19	77	16	56	36	3	0	59	1.16
264659--264833	41	4.3	41	69	8	131	30	20	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264680--264731	20	2.5	21	87	3	70	40	17	21	21	1.91
264741--264807	21	3.2	21	73	12	66	22	20	16	40	1.91
265368--265434	19	3.5	19	85	2	89	49	25	14	10	1.76
265430--265575	19	8.1	19	70	19	107	12	22	20	44	1.85
265446--265546	52	1.9	53	91	2	168	11	21	23	42	1.86
265485--265550	33	2.0	34	90	3	107	12	22	24	40	1.88
267696--267762	21	3.2	21	66	6	55	23	35	20	19	1.95
267644--267762	42	2.8	42	81	5	107	22	36	18	22	1.95
269113--269148	14	2.6	14	95	0	63	30	0	25	44	1.54
269255--269334	19	4.5	19	80	15	107	45	21	22	11	1.83
269271--269353	33	2.5	33	94	0	148	48	22	20	8	1.76
269359--269437	33	2.4	33	95	0	140	11	25	20	43	1.85
269379--269437	19	3.4	19	73	22	74	13	22	18	45	1.84
269363--269419	14	3.7	14	72	20	51	10	26	21	42	1.85

Tables:   1   2

The End!