genome.fa.s4834.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004834.1 Hibiscus syriacus cultivar Beakdansim tig00010888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  393506

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325255--325335	23	3.6	22	76	15	78	80	4	13	1	0.94
325249--325313	32	2.1	30	85	5	85	81	6	12	0	0.86
325250--325338	29	3.2	28	83	10	94	80	5	12	1	0.93
325255--325338	28	3.1	27	81	13	84	80	4	13	1	0.92
325956--326020	22	3.0	22	97	0	121	38	27	12	21	1.89
326435--326471	18	2.0	19	94	5	67	18	5	32	43	1.73
326845--328324	106	14.0	106	90	1	2222	33	25	18	23	1.96
329039--329143	37	2.8	37	86	0	147	40	15	14	30	1.87
329746--329772	2	13.5	2	100	0	54	48	0	0	51	1.00
329996--330024	2	14.5	2	100	0	58	48	0	0	51	1.00
330032--330080	13	3.9	12	82	12	55	12	6	0	81	0.86
330031--330084	17	3.4	17	76	7	51	12	5	0	81	0.85
332309--332342	16	2.1	16	94	0	59	47	17	17	17	1.84
332328--332412	32	2.7	31	80	5	107	40	17	17	24	1.91
343176--343288	40	2.7	42	82	6	133	45	2	1	50	1.26
343872--343936	23	2.8	23	85	2	85	38	1	3	56	1.24
347049--347075	14	1.9	14	100	0	54	66	0	0	33	0.92
348052--348111	28	2.2	28	96	3	113	43	18	18	20	1.88
348176--348254	30	2.7	29	73	11	72	43	0	3	53	1.19
348541--348574	13	2.8	12	91	8	59	14	8	0	76	1.01
355068--355231	88	1.9	88	94	0	292	42	10	14	32	1.80
355256--355714	200	2.3	197	86	4	602	30	15	13	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355416--356120	327	2.1	329	90	1	1110	29	15	13	41	1.84
357469--357523	21	2.6	21	100	0	110	40	16	16	27	1.89
357544--357581	20	1.9	20	94	0	67	47	13	21	18	1.82
357505--357971	182	2.6	181	87	2	654	42	13	17	26	1.86
357896--357942	20	2.4	19	82	10	67	53	10	17	19	1.72
357905--357947	20	2.3	19	88	11	63	51	11	16	20	1.75
360141--360184	21	2.1	21	86	0	61	40	9	31	18	1.81
360218--360283	33	2.0	33	90	0	105	30	1	46	21	1.60
362069--362112	17	2.4	18	88	7	63	29	2	9	59	1.41
362230--363179	200	4.9	200	93	3	1542	36	15	17	31	1.90
364578--364671	6	15.7	6	78	8	66	40	7	30	21	1.81
364578--364641	18	3.6	18	78	0	74	42	9	29	18	1.82
364578--364671	12	7.8	12	80	0	80	40	7	30	21	1.81
364578--364659	36	2.3	36	86	0	110	40	8	30	20	1.82
364595--364675	9	9.0	9	75	0	72	38	6	32	23	1.80
366255--366327	23	3.2	23	88	0	101	34	4	21	39	1.73
366705--367196	183	2.7	183	96	1	891	34	15	17	32	1.91
369661--369725	25	2.6	25	95	0	112	41	10	12	35	1.78
370072--370134	22	2.8	23	85	4	92	36	4	20	38	1.74
370072--370154	45	1.9	42	83	11	105	36	4	19	39	1.73
370146--370184	20	2.0	20	89	0	60	28	12	7	51	1.67
370499--370571	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369877--371158	421	3.0	428	95	2	2264	40	7	12	39	1.71
370925--370992	23	3.0	23	93	0	118	33	5	22	38	1.78
376517--376597	2	43.0	2	75	16	57	39	1	1	58	1.14
376651--376738	37	2.4	38	79	12	94	20	4	3	71	1.18
377026--377115	27	3.3	27	72	9	76	25	12	1	61	1.38
387489--387597	56	1.9	57	87	3	159	53	12	21	12	1.72
388335--389231	209	4.3	211	93	3	1456	34	25	18	22	1.96
388335--389231	106	8.7	105	93	3	1427	34	25	18	22	1.96
390585--390613	2	14.5	2	100	0	58	48	0	0	51	1.00
391775--391879	49	2.1	50	87	7	151	40	4	5	48	1.48

Tables:   1   2

The End!