Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004874.1 Hibiscus syriacus cultivar Beakdansim tig00010986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101531

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2334--2367
16
2.1
16
88
5
50
64
2
2
29
1.22
4708--4745
19
2.0
19
89
0
58
34
10
15
39
1.82
4941--5055
61
1.9
61
81
3
142
26
18
24
31
1.97
5153--5252
43
2.3
42
83
6
121
36
5
24
35
1.77
8086--8116
16
1.9
16
93
0
53
87
3
9
0
0.66
8086--8140
26
2.0
28
89
6
87
80
5
12
1
0.97
15933--15963
16
1.9
16
93
0
53
54
19
12
12
1.70
19763--19789
14
1.9
14
100
0
54
11
29
37
22
1.89
22044--22285
125
1.9
126
89
4
382
19
11
31
37
1.88
29348--29397
23
2.2
22
92
3
82
22
40
20
18
1.92
35844--36135
149
2.0
149
88
2
444
20
13
30
36
1.90
38224--38261
12
2.9
14
76
15
53
21
7
2
68
1.28
41526--41654
35
3.7
35
76
6
134
30
17
17
34
1.93
41522--41653
71
1.9
71
91
0
219
31
17
17
34
1.93
48502--48541
16
2.5
17
80
19
50
40
7
12
40
1.71
48934--49075
71
2.0
71
83
2
178
30
21
18
30
1.97
50754--50912
55
2.9
55
83
3
212
34
16
19
29
1.94
50872--50952
40
2.0
40
92
0
135
34
12
20
32
1.90
51210--51529
68
4.7
68
93
0
532
30
14
25
29
1.95
51487--52058
81
7.1
81
85
3
773
34
10
24
30
1.89
56506--56534
13
2.2
13
100
0
58
65
0
6
27
1.18
56989--57013
12
2.1
12
100
0
50
28
0
8
64
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66791--66942
74
2.1
74
100
0
304
32
26
21
19
1.97
68216--68335
45
2.7
45
84
0
168
45
5
7
41
1.56
68942--68983
20
2.1
20
95
0
75
40
28
16
14
1.88
68924--68995
23
3.3
22
80
11
85
37
26
19
16
1.93
70377--70820
235
1.9
236
99
0
881
38
24
17
19
1.93
72544--72601
30
1.9
30
89
0
89
22
24
18
34
1.96
72543--72608
30
2.2
29
84
7
87
21
21
19
37
1.94
74109--74156
23
2.1
23
88
7
71
14
0
12
72
1.11
74109--74161
11
4.7
11
75
13
54
15
0
13
71
1.14
75099--75161
29
2.2
29
85
0
81
17
9
25
47
1.77
75504--75571
35
1.9
35
87
0
100
45
23
0
30
1.53
75574--75651
35
2.2
35
88
0
120
38
0
20
41
1.53
76189--76213
5
5.0
5
100
0
50
20
0
0
80
0.72
84416--84527
43
2.7
41
81
5
109
33
27
16
23
1.95
86568--86657
4
21.2
4
72
17
58
21
3
2
73
1.09
86564--86649
9
9.8
9
72
14
63
20
3
2
73
1.10
86558--86617
24
2.5
24
81
10
68
25
1
1
71
1.04
86815--86858
9
4.9
9
86
10
63
11
2
0
86
0.66
86813--86864
15
3.4
14
84
12
59
13
3
0
82
0.80
86866--86941
14
5.2
15
73
17
63
13
13
2
71
1.26
86895--86958
28
2.3
27
79
12
67
18
7
1
71
1.18
94910--94961
23
2.3
23
100
0
104
46
21
19
13
1.84

Tables:   1

The End!