genome.fa.s4880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004880.1 Hibiscus syriacus cultivar Beakdansim tig00010995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69921

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46--433	26	16.5	26	65	22	198	20	22	10	46	1.82
67--106	21	2.0	21	95	5	73	15	27	15	42	1.86
1--313	46	6.9	46	86	4	449	20	23	10	45	1.82
88--386	72	4.2	72	74	15	300	20	23	10	45	1.82
1--313	91	3.4	91	89	4	465	20	23	10	45	1.82
1--313	137	2.3	137	87	5	438	20	23	10	45	1.82
185--431	118	2.1	119	87	3	349	20	22	10	46	1.82
302--465	46	3.6	46	86	2	222	20	21	10	46	1.80
139--465	164	2.0	163	89	3	496	21	22	10	45	1.82
296--465	92	1.8	93	86	3	245	20	21	10	47	1.80
883--974	41	2.2	41	82	0	103	25	22	14	38	1.92
5034--5285	81	3.1	81	94	0	434	26	21	14	37	1.92
4983--5285	162	1.9	161	88	2	455	26	22	14	36	1.92
5421--5529	55	2.0	55	81	3	130	34	20	7	37	1.80
5669--5785	46	2.6	46	94	1	209	20	23	11	44	1.83
5700--5857	72	2.2	72	94	0	271	20	24	10	44	1.82
5669--5903	118	2.0	117	93	2	400	21	24	10	44	1.83
5772--5935	46	3.6	46	94	2	285	21	24	9	43	1.83
5706--5938	26	9.9	25	69	21	155	21	23	10	45	1.82
6355--6431	22	3.6	22	69	22	56	24	23	15	36	1.94
6358--6445	41	2.1	41	83	4	106	22	25	14	37	1.92
9684--9722	16	2.4	16	91	0	60	17	2	30	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11985--12022	17	2.2	18	86	9	53	26	18	2	52	1.58
16450--16483	17	2.0	17	94	0	59	26	0	38	35	1.57
16480--16526	23	2.0	24	91	4	78	27	0	34	38	1.57
17036--17092	25	2.3	25	93	0	105	26	19	22	31	1.98
18092--18119	7	4.0	7	100	0	56	57	14	14	14	1.66
26760--26865	31	3.3	30	67	21	79	40	25	16	17	1.90
28797--28841	14	3.2	14	93	0	81	35	13	28	22	1.92
28839--28889	14	3.6	14	82	10	68	27	11	29	31	1.92
28840--28898	28	2.1	28	87	6	84	27	11	28	32	1.92
32338--32384	21	2.3	21	96	3	87	40	8	17	34	1.79
34721--34763	17	2.5	17	100	0	86	32	32	0	34	1.58
35940--36277	131	2.6	132	82	3	396	40	17	11	31	1.84
37626--37675	20	2.5	20	96	0	91	50	30	4	16	1.63
38536--38933	134	3.0	134	80	1	397	29	14	21	34	1.93
39456--39572	59	2.0	59	89	0	180	29	19	18	32	1.96
45753--45926	81	2.1	81	88	0	258	27	19	15	37	1.92
46258--46347	46	2.0	46	84	0	117	23	22	7	46	1.77
47962--48052	2	45.5	2	100	0	182	49	0	0	50	1.00
50064--50094	2	15.5	2	93	0	53	48	3	0	48	1.17
50240--50495	81	3.1	81	94	0	431	26	21	14	37	1.92
50189--50495	162	1.9	163	86	2	447	27	21	14	36	1.92
50627--50735	55	2.0	55	81	3	130	34	20	7	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50875--50992	46	2.6	46	91	0	200	20	22	10	46	1.80
50905--51064	72	2.2	71	91	3	257	21	23	9	46	1.80
50875--51110	118	2.0	118	92	1	393	21	23	9	45	1.81
50978--51142	46	3.6	46	94	2	287	21	24	9	44	1.82
51566--51643	22	3.6	22	69	19	56	24	23	15	37	1.93
53972--54008	16	2.3	16	90	0	56	18	2	29	48	1.62
56318--56355	17	2.2	18	86	9	53	26	18	2	52	1.58
60302--60342	18	2.3	18	83	4	57	4	21	2	70	1.18
60304--60336	9	3.7	9	95	0	57	0	21	3	75	0.93
60793--60826	17	2.0	17	94	0	59	26	0	38	35	1.57
60823--60869	23	2.0	24	91	4	78	27	0	34	38	1.57
61379--61435	25	2.3	25	93	0	105	26	19	22	31	1.98
62437--62478	7	6.0	7	100	0	84	57	14	14	14	1.66

Tables:   1

The End!