genome.fa.s4899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004899.1 Hibiscus syriacus cultivar Beakdansim tig00011022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100864

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6487--6805	54	5.9	54	88	2	471	30	18	17	32	1.94
6487--6805	107	3.0	108	89	2	480	30	18	17	32	1.94
6500--6805	161	1.9	163	91	1	508	30	18	17	32	1.95
10041--10081	9	4.4	9	85	14	57	78	2	2	17	0.98
10311--10339	2	14.5	2	100	0	58	51	0	0	48	1.00
10335--10410	39	2.1	37	85	9	102	68	2	3	25	1.20
10335--10417	38	2.2	36	85	8	105	66	2	4	26	1.24
10447--10498	2	26.0	2	86	7	70	50	1	3	44	1.31
10447--10521	14	5.1	14	81	12	71	54	1	4	40	1.27
10492--10573	38	2.2	37	78	10	85	65	0	3	30	1.09
10492--10573	20	4.3	19	72	19	73	65	0	3	30	1.09
11578--11796	85	2.6	83	82	7	257	24	17	21	36	1.94
12028--12233	109	1.9	109	87	2	306	21	19	23	35	1.96
12950--13119	67	2.6	66	79	6	184	37	9	20	33	1.84
12950--13248	65	4.7	65	76	9	222	38	11	18	31	1.86
13208--13393	36	5.3	36	74	14	174	37	12	20	28	1.90
13308--13393	37	2.4	36	84	2	109	40	13	20	24	1.89
13208--13591	102	3.8	102	88	1	538	38	11	19	30	1.88
13123--13628	204	2.5	203	79	4	631	39	12	18	29	1.87
13123--13591	102	4.6	101	85	2	521	39	12	18	29	1.87
14464--14575	32	3.5	31	80	10	111	36	17	13	32	1.89
15352--15430	25	3.0	27	87	12	112	2	17	3	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15398--15428	16	1.9	16	100	0	62	0	19	3	77	0.90
15353--15430	13	6.0	12	78	19	77	1	17	3	76	1.00
15353--15435	27	3.2	25	88	10	107	1	18	4	75	1.04
18592--18628	19	2.0	19	89	5	58	67	0	18	13	1.23
18804--18864	17	3.3	17	69	20	50	65	1	6	26	1.26
18903--18953	2	26.0	2	86	11	70	50	0	3	45	1.20
18903--18976	14	5.1	14	79	15	71	55	0	4	40	1.19
20054--20097	20	2.2	20	87	0	61	38	0	18	43	1.50
22348--22389	20	2.0	21	86	4	59	35	2	0	61	1.09
22897--22925	14	2.1	14	100	0	58	34	0	6	58	1.25
46060--46121	26	2.4	26	77	15	67	54	0	1	43	1.09
46362--46392	6	5.2	6	92	0	53	67	0	3	29	1.06
48887--48915	3	9.7	3	100	0	58	31	0	34	34	1.58
51754--51808	28	2.0	28	92	0	92	7	10	21	60	1.55
56000--56025	3	8.7	3	100	0	52	0	30	0	69	0.89
59284--59314	14	2.2	14	94	0	53	9	6	16	67	1.39
59306--59338	10	3.2	11	91	8	52	9	0	12	78	0.95
59291--59358	35	1.9	35	90	0	109	11	4	14	69	1.34
59569--59625	24	2.4	24	75	0	60	10	12	19	57	1.63
60428--60652	7	31.1	7	72	23	134	39	0	4	55	1.25
60420--60663	5	46.2	5	70	23	130	39	0	3	55	1.23
60496--60664	58	3.1	56	76	18	158	38	1	2	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60428--60654	33	6.5	34	72	21	152	39	0	3	55	1.25
60570--60665	17	5.6	17	74	22	78	38	0	0	61	0.96
60539--60664	22	5.8	21	73	19	98	38	0	1	60	1.07
72192--72273	40	2.1	39	84	6	103	36	18	19	25	1.94
73423--73767	7	48.1	7	73	18	234	40	1	4	54	1.28
73441--73767	19	18.2	18	68	20	129	40	1	3	54	1.28
73687--73779	3	31.7	3	75	21	74	37	0	1	61	1.03
73676--73778	19	6.2	16	71	25	63	36	0	1	61	1.07
74984--75008	5	5.0	5	100	0	50	20	0	0	80	0.72
86688--86743	23	2.3	23	75	6	67	78	3	14	3	1.02
86687--86759	29	2.3	29	82	13	83	73	5	13	6	1.21
88103--88162	24	2.5	25	78	15	72	35	15	18	31	1.91
89173--89211	20	2.0	20	85	14	55	28	10	10	51	1.68
100451--100498	25	2.0	24	84	15	64	47	0	4	47	1.21

Tables:   1

The End!