Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004907.1 Hibiscus syriacus cultivar Beakdansim tig00011039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273424

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
246189--246382
98
2.0
98
95
0
352
46
4
4
43
1.44
246170--246402
13
17.3
13
70
17
104
47
4
4
43
1.44
246390--246432
18
2.4
18
96
0
77
55
4
9
30
1.52
246384--246549
79
2.1
81
85
5
221
48
2
5
43
1.39
246656--246700
2
21.0
2
82
13
54
44
2
4
48
1.35
246656--246700
23
1.9
24
90
4
74
44
2
4
48
1.35
246669--246716
20
2.5
20
89
3
71
41
8
4
45
1.53
246718--246818
7
14.4
7
74
0
67
23
0
26
49
1.50
247048--247092
19
2.3
20
88
3
65
22
33
0
44
1.53
247742--247794
20
2.7
20
87
0
79
47
0
28
24
1.52
247821--247882
32
2.0
31
87
9
90
56
1
9
32
1.41
252884--252928
14
3.1
14
80
3
54
44
6
0
48
1.29
263087--263134
23
2.1
23
84
0
60
37
12
16
33
1.86
263549--263621
23
3.2
23
92
0
119
38
21
5
34
1.77
263605--263656
20
2.6
20
93
0
86
30
15
0
53
1.42
264069--264131
23
2.7
23
90
0
99
36
20
4
38
1.74
264476--264540
25
2.6
25
95
0
112
36
10
10
41
1.75
268311--268385
3
25.0
3
83
0
87
25
33
6
34
1.82
268315--268389
12
6.2
12
87
0
96
24
33
8
34
1.84
268345--268397
12
4.4
12
81
9
72
16
33
13
35
1.88
269853--272007
397
5.4
400
95
2
3866
31
17
14
37
1.89
269853--272007
200
10.9
200
94
2
3839
31
17
14
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
272066--272126
19
3.3
18
88
2
59
52
11
1
34
1.47
272078--272126
19
2.6
19
96
0
89
55
10
2
32
1.45
272705--272733
4
7.2
4
100
0
58
48
27
0
24
1.51

Tables:   1   2

The End!