genome.fa.s4911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004911.1 Hibiscus syriacus cultivar Beakdansim tig00011060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136175

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152--191	17	2.4	17	86	0	53	12	25	32	30	1.92
969--1005	18	2.1	18	85	14	51	43	10	13	32	1.79
2622--2663	12	3.5	13	78	15	54	14	9	16	59	1.60
4648--4954	154	2.0	157	96	1	575	26	7	23	42	1.79
5764--5800	18	2.1	18	85	14	51	43	10	13	32	1.79
7409--7473	12	5.4	12	73	14	62	13	9	18	58	1.61
7405--7477	24	3.0	24	79	0	92	17	8	17	56	1.65
25977--26073	46	2.1	46	82	0	113	20	21	19	38	1.94
25994--26086	23	4.1	22	70	10	62	20	20	22	36	1.95
26205--26241	6	6.2	6	87	0	56	45	0	21	32	1.52
27942--27971	13	2.3	13	94	0	51	16	23	40	20	1.91
28203--28242	21	1.9	21	89	0	62	50	10	10	30	1.69
29344--29391	20	2.4	21	86	10	66	29	16	4	50	1.64
30734--30791	21	2.8	21	94	0	98	22	18	37	20	1.94
30970--31007	19	2.0	19	90	10	60	36	0	7	55	1.29
31143--31181	19	2.0	20	90	5	62	15	17	0	66	1.25
31670--31708	20	2.0	20	89	0	60	33	10	23	33	1.88
41801--41851	25	2.0	26	85	11	70	31	0	0	68	0.90
43792--43845	25	2.1	26	82	3	65	68	1	1	27	1.10
44233--44310	3	26.7	3	74	14	65	32	2	1	64	1.15
44222--44261	18	2.1	20	86	9	57	22	5	5	67	1.30
45820--45850	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46875--46918	16	2.6	17	78	3	54	22	2	6	68	1.25
47023--47051	4	7.2	4	100	0	58	24	0	0	75	0.80
47362--47680	123	2.6	123	82	2	365	42	14	18	25	1.88
49480--49784	122	2.5	123	85	1	407	42	14	18	24	1.88
51056--51084	2	14.5	2	100	0	58	51	0	0	48	1.00
51422--51493	30	2.4	31	81	6	76	33	26	19	20	1.97
51452--51578	31	4.0	32	76	7	109	34	19	17	28	1.95
52274--52331	20	2.7	20	86	10	71	24	22	24	29	1.99
54768--54796	2	14.5	2	100	0	58	51	0	0	48	1.00
55151--55244	31	3.0	31	85	0	125	32	21	17	28	1.95
57363--57406	16	2.6	17	78	3	54	22	2	6	68	1.25
59314--59388	35	2.1	35	92	0	123	42	21	0	36	1.53
59983--60062	40	2.0	40	97	0	151	35	15	23	26	1.94
66703--66754	23	2.3	23	96	0	95	38	25	21	15	1.92
69471--69536	30	2.2	30	83	0	78	36	24	28	10	1.89
69744--69814	24	2.9	24	87	2	79	39	11	18	30	1.86
69759--69814	24	2.3	24	93	0	94	37	12	17	32	1.88
75619--75667	26	2.0	26	88	8	75	53	0	2	44	1.12
76080--76104	13	1.9	13	100	0	50	52	0	0	48	1.00
85820--85877	28	2.1	28	93	0	98	55	10	15	18	1.68
87555--87615	27	2.3	27	94	0	104	36	11	24	27	1.90
90199--90264	14	4.4	14	78	17	78	37	15	31	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90222--90273	14	3.0	19	68	26	60	40	15	28	15	1.88
90208--90273	33	2.0	33	100	0	132	39	15	30	15	1.88
102732--102782	2	25.5	2	100	0	102	49	0	0	50	1.00
103020--103060	3	13.7	3	100	0	82	34	0	0	65	0.93
103163--103226	30	2.1	30	82	5	76	60	1	0	37	1.06
110479--110565	20	4.6	20	81	16	105	45	24	10	19	1.81
110480--110548	36	1.9	35	85	11	95	46	24	10	18	1.80
111111--111175	19	3.4	19	91	4	105	12	18	21	47	1.81
113262--113323	21	3.0	21	79	6	72	24	30	14	30	1.95
114854--114896	21	2.0	21	81	0	50	30	30	25	13	1.94
114925--114970	24	2.0	22	83	8	56	32	32	26	8	1.87
115464--115517	2	27.0	2	100	0	108	50	0	0	50	1.00
116549--116639	23	4.0	23	85	5	114	20	28	24	26	1.99
117978--118019	13	3.2	13	80	6	57	28	0	16	54	1.42
117930--118075	64	2.3	64	89	2	213	30	2	15	52	1.54
118161--118217	29	2.0	29	93	6	98	35	26	12	26	1.92
119580--119616	18	2.1	18	89	0	56	51	10	5	32	1.60
119731--119760	15	2.0	15	100	0	60	33	0	20	46	1.51
120014--120063	25	2.0	25	84	0	64	42	18	8	32	1.79
120194--120254	29	2.1	29	87	0	86	26	14	26	32	1.95
120490--120525	18	2.0	18	94	0	63	19	2	22	55	1.56
122946--122979	12	2.8	12	90	0	50	14	0	29	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123573--123611	15	2.5	15	83	4	51	66	0	2	30	1.05
123573--123611	16	2.5	15	84	8	51	66	0	2	30	1.05
123769--123865	20	4.8	20	79	7	88	35	11	21	31	1.89
123788--123900	20	5.6	20	81	6	102	30	12	24	31	1.92
123780--123901	61	2.0	60	82	4	147	32	12	22	31	1.91
124494--124966	181	2.6	182	91	0	741	41	14	17	26	1.87
124887--124933	20	2.4	19	79	10	58	53	8	17	21	1.70
127155--127198	21	2.1	21	91	0	70	40	11	31	15	1.83
127232--127297	33	2.0	33	90	0	105	28	0	48	22	1.51
129087--129135	19	2.6	19	96	0	89	32	2	10	55	1.45
129369--130928	598	2.6	600	96	0	2858	36	14	18	30	1.91
129369--130928	798	2.0	798	95	0	2784	36	14	18	30	1.91
129369--130928	200	7.8	200	95	0	2750	36	14	18	30	1.91
131037--131405	181	2.0	180	95	0	666	34	14	17	33	1.90

Tables:   1

The End!