Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004928.1 Hibiscus syriacus cultivar Beakdansim tig00011092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80278

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1317--1346
10
2.8
11
90
10
53
33
0
0
66
0.92
3427--3484
3
19.0
3
92
3
98
68
0
31
0
0.89
4812--4861
15
3.3
15
88
2
64
6
2
28
64
1.28
4812--4861
16
3.2
16
88
5
66
6
2
28
64
1.28
7141--7169
3
9.7
3
100
0
58
65
0
0
34
0.93
7315--7565
80
3.2
79
87
1
351
28
19
17
34
1.95
7957--8032
25
3.0
25
81
11
82
32
10
7
48
1.66
11860--11918
21
2.7
23
75
19
56
22
5
5
67
1.30
18004--18074
31
2.3
31
100
0
142
5
32
12
49
1.64
22370--22397
3
9.3
3
100
0
56
64
0
0
35
0.94
23769--23822
28
1.9
28
84
0
72
33
12
5
48
1.65
26743--26789
23
2.0
23
84
8
60
65
2
2
29
1.15
27413--27449
16
2.3
16
100
0
74
18
10
27
43
1.83
28746--28924
95
1.9
96
82
5
229
36
17
21
24
1.94
29370--29698
79
4.2
79
87
0
426
36
10
22
30
1.88
29370--29698
158
2.1
158
87
0
469
36
10
22
30
1.88
30643--30724
41
2.0
41
97
0
155
30
7
28
34
1.84
35789--35826
20
1.9
20
88
0
58
28
18
21
31
1.97
35865--35926
19
2.9
21
79
13
65
33
14
30
20
1.93
35810--35989
95
1.9
95
85
6
249
35
17
22
23
1.95
36437--36547
34
3.1
35
70
12
116
38
9
23
27
1.86
36435--36751
79
4.1
79
89
2
448
37
10
23
28
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45322--45359
20
1.9
20
94
0
67
28
15
39
15
1.89
45390--45432
19
2.3
19
87
0
59
46
16
13
23
1.83
45403--45447
19
2.4
19
96
0
81
40
17
15
26
1.90
45432--45478
22
2.1
23
88
4
69
27
12
25
34
1.92
45810--46850
54
19.3
54
84
1
1021
30
19
18
30
1.96
47125--47291
46
3.7
46
87
3
239
45
9
22
22
1.81
51951--52934
54
18.2
54
82
4
1009
29
19
18
32
1.96
53268--53431
46
3.6
46
89
1
240
46
11
22
19
1.82
56321--56370
21
2.5
20
80
9
57
32
10
26
32
1.89
56781--56819
17
2.3
17
86
0
51
28
0
7
64
1.21
56863--56909
15
3.1
15
81
0
58
29
6
21
42
1.77
57039--57118
25
3.2
25
78
1
90
23
25
18
32
1.97
58774--58817
21
2.1
21
87
8
63
13
9
4
72
1.24
66902--66936
16
2.1
16
89
10
52
42
0
11
45
1.40
66947--66979
17
1.9
18
88
11
52
36
0
15
48
1.45
67239--67304
19
3.4
19
76
2
69
43
9
16
30
1.79
67358--67401
12
3.6
12
81
3
52
52
2
18
27
1.57

Tables:   1

The End!