genome.fa.s4929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004929.1 Hibiscus syriacus cultivar Beakdansim tig00011093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209567

Tables:   1   2   

This is table  1  of  2  ( 129 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265--333	6	11.7	6	98	1	131	0	17	50	31	1.46
439--769	20	16.4	20	92	3	547	24	24	15	35	1.94
780--855	21	3.5	21	72	13	82	17	23	28	30	1.97
757--862	44	2.4	44	98	0	203	16	22	23	36	1.94
755--834	23	3.6	23	72	13	85	20	22	22	35	1.96
848--900	20	2.7	20	91	2	81	11	18	18	50	1.76
2344--2401	18	3.1	18	72	13	53	53	0	0	46	1.00
2391--2481	26	3.3	26	79	17	87	46	0	3	50	1.17
2403--2481	29	2.9	28	75	17	76	44	0	2	53	1.14
3878--3924	18	2.6	18	100	0	94	25	14	36	23	1.93
4937--5334	14	30.0	14	67	23	184	40	4	5	50	1.44
4939--5308	8	48.8	8	70	21	183	40	3	5	50	1.42
4929--5319	37	10.3	37	81	13	297	40	3	5	50	1.43
5086--5319	106	2.2	102	86	6	315	41	3	5	50	1.41
5808--5838	6	5.2	6	92	0	53	19	61	0	19	1.35
5808--5843	18	2.0	18	94	0	63	16	58	2	22	1.51
7572--7930	172	2.1	173	90	1	560	37	18	5	39	1.72
8390--8433	23	1.9	23	100	0	88	25	40	25	9	1.84
8463--8509	22	2.1	22	96	0	85	12	36	21	29	1.91
10259--10305	21	2.2	21	100	0	94	42	19	29	8	1.80
12840--12880	8	5.2	8	82	5	57	34	0	29	36	1.58
12951--13447	128	3.9	128	95	1	894	23	24	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12954--13444	255	1.9	252	96	2	912	23	24	19	32	1.98
13845--13945	34	3.0	34	86	0	148	38	3	3	53	1.38
14468--14558	21	4.3	20	83	6	101	20	25	34	19	1.97
14562--14609	21	2.3	21	85	0	60	22	12	39	25	1.89
16331--16419	34	2.7	31	81	6	97	59	2	0	38	1.10
16334--16408	31	2.4	33	77	11	84	60	1	0	38	1.06
28604--28656	21	2.5	21	84	0	70	20	26	18	33	1.96
28646--28719	20	3.7	20	74	3	85	37	20	20	21	1.94
28646--28737	41	2.3	40	86	1	121	35	21	20	21	1.96
28915--28980	22	3.0	22	90	0	105	24	39	15	21	1.91
29316--29406	20	4.6	20	84	1	94	15	17	21	45	1.86
29370--29413	20	2.2	20	91	0	70	11	13	20	54	1.69
31262--31438	20	9.5	20	77	16	166	40	22	19	18	1.92
31285--31365	33	2.4	33	83	2	99	45	23	19	11	1.82
31352--31455	40	2.7	38	90	8	144	36	22	20	21	1.95
31485--31571	20	4.3	20	89	0	102	21	16	21	40	1.91
32057--32098	21	2.2	19	87	12	59	21	35	19	23	1.96
32081--32160	42	1.9	42	82	5	99	21	35	20	23	1.96
33536--33571	14	2.6	14	90	0	54	30	0	22	47	1.52
33697--33750	14	3.5	14	73	22	54	44	20	24	11	1.83
33677--33770	33	2.8	33	91	3	143	43	20	23	12	1.86
33710--33797	20	4.8	20	82	14	118	47	17	21	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33807--33891	33	2.5	33	88	5	118	14	22	18	44	1.85
33874--33942	20	3.5	20	84	4	95	17	20	24	37	1.93
33805--33961	34	4.5	33	76	16	111	15	22	22	40	1.91
37267--37333	20	3.3	20	97	0	125	23	17	25	32	1.97
37278--37476	20	9.9	20	86	7	135	23	19	22	35	1.96
37267--37353	40	2.2	40	85	4	113	24	17	25	33	1.96
37347--37476	40	3.2	40	91	1	188	21	19	20	38	1.94
37307--37476	60	2.8	58	77	14	175	22	18	21	37	1.95
37483--37528	21	2.2	21	92	0	74	39	17	26	17	1.91
53391--53466	33	2.3	34	80	14	88	64	5	0	30	1.15
64044--64070	2	13.5	2	100	0	54	51	0	0	48	1.00
66635--66662	3	9.3	3	100	0	56	67	32	0	0	0.91
66877--66915	14	2.8	14	84	0	51	35	28	12	23	1.91
67863--67928	27	2.4	27	100	0	132	18	13	22	45	1.84
77728--78418	345	2.0	345	100	0	1382	25	18	17	38	1.92
84287--84353	28	2.4	28	97	0	125	26	22	2	47	1.65
87653--87698	21	2.2	21	96	0	83	15	26	19	39	1.91
87695--87747	20	2.7	20	90	0	79	39	20	18	20	1.92
87747--87820	20	3.7	20	94	0	130	28	25	18	27	1.98
87913--87975	27	2.3	27	100	0	126	39	33	4	22	1.75
88682--88728	24	2.0	24	91	0	76	25	21	19	34	1.96
88687--88740	24	2.2	24	90	0	81	22	18	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88932--88967	14	2.5	14	90	4	54	58	22	13	5	1.56
91160--91233	20	3.7	20	87	3	105	36	25	18	18	1.94
91279--91377	33	2.9	34	86	3	137	13	23	19	44	1.85
91483--91518	14	2.6	14	95	0	63	44	22	0	33	1.53
92903--93010	42	2.6	42	76	5	112	23	19	36	21	1.95
93490--93538	20	2.5	20	93	0	89	30	24	20	24	1.98
94257--94301	23	2.0	23	90	0	72	24	26	26	22	2.00
96043--96087	21	2.1	21	87	0	63	15	24	28	31	1.96
101000--101044	21	2.1	21	87	0	63	15	24	28	31	1.96
101756--101822	20	3.3	20	95	0	116	22	19	20	37	1.95
101746--101885	40	4.0	34	72	12	129	17	20	20	42	1.90
103777--103866	20	4.6	20	85	1	101	45	23	16	14	1.84
104203--104268	22	3.0	22	88	0	96	22	15	37	24	1.92
104466--104552	20	4.3	20	89	0	129	19	17	19	43	1.88
104548--104600	21	2.5	21	93	0	88	37	20	22	18	1.94
106616--106677	31	2.0	31	84	6	81	43	14	22	19	1.87
108534--108573	16	2.4	16	87	4	53	70	0	5	25	1.08
108778--108820	20	2.2	20	83	8	52	62	4	16	16	1.48
109059--109116	30	2.0	29	86	3	80	72	0	6	20	1.07
110810--111475	105	6.4	104	93	2	1052	23	18	24	33	1.97
112304--112332	8	3.6	8	100	0	58	0	0	10	89	0.48
122768--122807	16	2.4	16	87	4	53	70	0	5	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123328--123403	24	3.1	25	77	11	68	69	1	3	25	1.13
123317--123374	30	2.0	29	86	3	80	72	0	6	20	1.07
143916--143956	22	1.9	22	95	5	75	36	0	2	60	1.10
155794--155933	62	2.3	62	92	0	244	35	11	35	17	1.85
159156--159180	12	2.1	12	100	0	50	0	16	0	84	0.63
165682--165747	2	35.5	2	84	14	88	46	0	0	53	1.00
167123--167168	20	2.3	20	78	14	51	45	4	0	50	1.21
169886--169995	47	2.4	46	80	16	131	43	0	0	55	1.06
169900--169968	31	2.2	32	85	14	92	44	0	0	55	0.99
169926--169976	14	3.9	13	75	17	52	49	0	0	50	1.00
170066--170110	23	2.0	23	86	0	63	53	2	2	42	1.25
170150--170219	29	2.3	29	81	13	79	52	2	0	44	1.15
170447--170493	22	2.1	22	88	0	67	46	10	6	36	1.64
170392--170540	70	2.1	70	97	1	282	37	14	8	39	1.77
171657--171694	2	19.0	2	94	0	67	47	0	0	52	1.00
172293--172326	15	2.3	15	94	0	59	38	5	23	32	1.79
183163--183215	21	2.5	21	84	0	70	20	26	18	33	1.96
183205--183278	20	3.7	20	74	3	85	37	20	20	21	1.94
183205--183296	41	2.3	40	86	1	121	35	21	20	21	1.96
183475--183540	22	3.0	22	90	0	105	24	39	15	21	1.91
183876--183966	20	4.6	20	84	1	94	15	17	21	45	1.86
183930--183973	20	2.2	20	91	0	70	11	13	20	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185825--186001	20	9.5	20	77	16	166	40	22	19	18	1.92
185848--185928	33	2.4	33	83	2	99	45	23	19	11	1.82
185915--186018	40	2.7	38	90	8	144	36	22	20	21	1.95
186048--186134	20	4.3	20	89	0	102	21	16	21	40	1.91
186620--186661	21	2.2	19	87	12	59	21	35	19	23	1.96
186644--186723	42	1.9	42	82	5	99	21	35	20	23	1.96
188105--188140	14	2.6	14	90	0	54	30	0	22	47	1.52
188266--188319	14	3.5	14	73	22	54	44	20	24	11	1.83
188246--188339	33	2.8	33	91	3	143	43	20	23	12	1.86
188279--188366	20	4.8	20	82	14	118	47	17	21	13	1.81

Tables:   1   2