genome.fa.s4937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004937.1 Hibiscus syriacus cultivar Beakdansim tig00011106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118754

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461--485	12	2.1	12	100	0	50	76	0	24	0	0.80
2376--2436	20	3.0	20	83	4	79	26	26	16	31	1.96
4819--4854	3	12.0	3	93	0	63	63	0	2	33	1.08
13899--13942	18	2.4	18	96	0	79	11	2	43	43	1.53
14208--14255	3	15.7	3	91	4	60	66	6	0	27	1.15
16303--16364	3	20.7	3	80	6	72	40	0	0	59	0.97
16303--16359	21	2.7	22	91	5	91	42	0	0	57	0.98
16374--16425	26	2.0	26	92	0	86	42	30	17	9	1.81
20840--20871	14	2.1	16	88	11	50	12	15	9	62	1.54
23129--23158	2	15.0	2	100	0	60	50	0	0	50	1.00
23478--23514	16	2.2	16	90	4	56	81	0	16	2	0.81
23485--23515	16	1.9	16	100	0	62	77	0	16	6	0.97
25749--25977	115	2.0	115	93	0	388	33	15	20	31	1.93
28469--28523	22	2.5	22	93	0	101	34	10	14	40	1.81
29038--29365	167	2.0	169	91	2	545	35	14	12	38	1.83
29242--29611	183	2.0	185	93	1	627	32	14	15	38	1.87
29552--29733	76	2.4	76	96	0	328	22	18	22	36	1.95
29895--29959	3	21.7	3	81	6	78	40	0	0	60	0.97
29966--30020	26	2.1	26	93	0	92	41	30	18	9	1.81
30981--31006	5	5.2	5	100	0	52	23	0	0	76	0.78
36055--36129	27	2.8	27	97	0	141	29	12	25	33	1.92
37934--37989	16	3.5	15	79	13	58	66	0	3	30	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38086--38134	27	1.9	25	84	12	64	26	2	20	51	1.59
39087--39152	30	2.3	31	79	12	77	56	6	0	37	1.24
39089--39147	30	1.9	31	86	3	84	55	6	0	37	1.26
40109--40476	30	12.6	30	77	11	245	40	8	1	50	1.40
40119--40386	59	4.5	59	77	5	213	39	8	0	51	1.39
40112--40386	119	2.3	118	81	6	297	39	9	0	50	1.39
40122--40436	178	1.8	171	82	7	400	39	8	0	51	1.40
40341--40426	29	3.5	24	79	10	77	37	9	1	52	1.41
40408--40473	31	2.1	31	88	0	96	46	4	1	46	1.32
40533--40579	18	2.6	18	96	0	85	51	4	0	44	1.21
40555--40622	27	2.4	29	85	4	86	52	2	7	36	1.44
40606--40665	24	2.3	26	80	11	70	51	0	11	36	1.38
45816--45844	2	14.5	2	100	0	58	51	0	0	48	1.00
47583--47611	14	2.1	14	100	0	58	31	6	13	48	1.69
48007--48058	20	2.6	20	93	0	86	19	26	26	26	1.99
48046--48127	23	3.6	22	77	8	85	26	23	26	23	2.00
48052--48146	44	2.2	44	85	11	124	26	21	26	26	1.99
57172--57225	2	27.0	2	100	0	108	50	0	0	50	1.00
58232--58277	21	2.2	21	84	0	56	50	6	19	23	1.71
61283--61358	35	2.2	35	90	0	116	39	22	1	36	1.63
61755--62002	130	1.9	130	92	0	415	35	15	13	35	1.86
61769--62033	130	2.0	129	81	4	300	39	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62330--62392	28	2.3	27	78	8	63	46	1	3	49	1.27
62472--62505	16	2.0	18	88	11	54	64	5	2	26	1.30
67721--67775	21	2.6	21	85	0	83	34	21	16	27	1.95
75506--75562	20	2.8	20	94	0	96	33	3	31	31	1.75
79669--79709	21	2.0	21	85	9	57	56	4	0	39	1.21
80636--80690	8	6.8	8	76	19	60	60	0	3	36	1.15
80640--80689	11	4.5	11	76	18	59	62	0	4	34	1.14
80959--80998	20	2.0	20	90	0	62	27	20	25	27	1.99
80964--81007	20	2.2	20	83	0	52	31	18	20	29	1.96
80825--81112	119	2.4	118	88	2	432	35	18	15	30	1.92
81697--81773	22	3.5	22	85	0	109	37	14	11	36	1.82
88132--88172	21	2.0	21	85	9	57	56	4	0	39	1.21
88192--88250	30	2.0	29	83	12	75	54	5	3	37	1.39
89137--89219	3	28.7	3	72	16	68	57	0	4	37	1.20
89139--89220	8	11.3	7	79	16	71	57	0	4	37	1.20
89137--89219	19	4.7	18	79	17	95	57	0	4	37	1.20
90415--90441	11	2.5	11	100	0	54	40	7	44	7	1.60
90843--90867	2	12.5	2	100	0	50	48	0	0	52	1.00
91354--91477	60	2.1	59	89	4	187	34	19	8	37	1.83
92147--92369	43	5.2	44	72	13	142	52	5	17	25	1.66
93750--93804	28	2.0	28	85	7	76	43	0	5	50	1.25
94169--94238	20	3.5	19	92	3	95	42	20	15	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94154--94257	40	2.6	40	74	6	95	42	22	16	19	1.89
94418--94455	20	1.9	20	94	0	67	21	18	15	44	1.86
94308--94604	146	2.0	146	91	1	479	25	18	18	36	1.94
94570--94635	20	3.3	20	76	0	78	25	15	15	43	1.85
94559--94654	40	2.4	40	91	0	147	22	16	16	43	1.87
94578--94655	20	3.8	20	69	14	52	23	16	16	43	1.87
96601--96681	20	4.0	20	75	9	65	24	25	17	32	1.97
96714--96764	22	2.4	21	80	6	57	25	17	23	33	1.96
96747--96830	41	2.0	41	88	4	125	25	25	19	30	1.98
96780--96952	89	2.0	88	87	3	249	32	20	17	29	1.96
96975--97030	20	2.8	20	80	0	76	19	17	19	42	1.89
97054--97107	20	2.7	20	85	0	63	25	22	14	37	1.93
97175--97252	20	3.9	20	80	9	88	17	19	21	41	1.91
104953--105004	26	2.0	27	92	3	88	19	9	21	50	1.76
106828--107186	132	2.7	132	84	1	461	40	16	10	32	1.82
114716--114901	40	4.7	40	72	6	146	34	17	22	24	1.96
114756--114924	79	2.2	79	79	12	188	36	17	20	25	1.94
114877--114985	39	2.8	40	83	6	134	44	18	12	24	1.85
117978--118736	54	14.1	55	85	5	980	34	18	11	35	1.86
117978--118736	109	7.0	109	86	5	974	34	18	11	35	1.86

Tables:   1

The End!