Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004968.1 Hibiscus syriacus cultivar Beakdansim tig00011160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80383

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
539--575
7
5.4
7
93
6
67
24
29
29
16
1.96
539--575
13
2.7
14
91
8
67
24
29
29
16
1.96
573--633
14
4.1
14
78
15
68
8
18
50
22
1.73
578--626
9
5.9
9
75
18
52
8
18
48
24
1.75
572--633
32
1.9
33
90
3
99
8
17
51
22
1.71
630--688
19
3.1
19
85
7
75
28
27
25
18
1.98
2707--2808
54
2.0
51
84
9
136
30
0
15
52
1.49
3253--3288
18
2.0
18
94
0
63
16
2
25
55
1.55
5324--5351
14
2.0
14
100
0
56
14
28
7
50
1.69
5488--5556
21
3.5
21
70
22
67
21
26
27
24
1.99
5471--5564
38
2.5
38
91
0
152
23
28
22
25
1.99
6408--6472
19
3.5
19
69
26
59
23
27
33
15
1.95
6410--6479
36
2.0
36
94
5
126
20
30
31
18
1.96
7958--8011
24
2.2
24
86
0
72
42
24
12
20
1.87
8137--8170
12
2.8
12
90
0
50
14
0
29
55
1.40
8916--9004
19
4.7
19
98
0
169
31
8
22
37
1.85
8992--9046
20
2.8
20
94
0
92
21
16
23
38
1.93
9079--9123
21
2.2
20
88
4
63
33
15
22
28
1.95
13643--13730
23
3.8
23
76
8
97
21
25
22
30
1.99
15371--15413
22
2.0
22
85
0
59
27
27
27
16
1.97
15441--15489
22
2.3
22
85
3
64
32
30
24
12
1.92
20498--20529
14
2.3
14
94
0
55
15
21
25
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24700--24853
31
5.0
31
91
1
229
35
22
21
20
1.96
29064--29217
31
5.0
31
91
1
229
35
22
21
20
1.96
31609--31642
8
4.2
8
92
0
59
38
2
0
58
1.13
31652--31681
2
15.0
2
100
0
60
50
0
0
50
1.00
32001--32963
55
17.6
55
92
2
1580
27
28
14
28
1.96
32001--32971
218
4.4
220
94
1
1659
27
28
14
28
1.96
33968--34018
8
6.4
8
76
17
52
15
7
0
76
1.00
33982--34016
7
4.9
7
86
6
52
14
2
0
82
0.77
47371--47446
2
38.5
2
97
2
145
50
0
0
50
1.00
47837--48203
131
2.8
130
85
4
477
32
11
16
39
1.84
51721--51747
13
2.1
13
100
0
54
37
14
25
22
1.93
51754--51784
4
7.8
4
100
0
62
25
0
0
74
0.82
51798--51846
6
8.7
6
80
13
59
20
10
0
69
1.17
51799--51842
21
2.1
21
95
0
79
20
11
0
68
1.20
51798--51835
15
2.8
13
88
11
51
21
10
0
68
1.19
52932--52960
14
2.0
15
93
6
51
6
27
13
51
1.66
54844--54907
23
2.8
23
82
0
92
32
26
25
15
1.95
57473--57509
16
2.3
16
95
0
65
35
27
0
37
1.57
59783--59851
23
3.0
23
82
0
93
30
23
26
20
1.98
60938--60974
17
2.2
17
90
4
58
56
21
0
21
1.42
67918--67953
18
1.9
19
88
5
56
69
5
16
8
1.33
69527--69565
16
2.4
16
91
0
60
28
43
17
10
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71057--71108
24
2.2
23
86
3
68
26
13
5
53
1.62

Tables:   1

The End!