genome.fa.s4971.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004971.1 Hibiscus syriacus cultivar Beakdansim tig00011165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87175

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5657--5703	18	2.5	19	83	10	62	74	10	2	12	1.16
8128--8241	53	2.2	53	83	3	149	39	11	21	27	1.88
8148--8270	53	2.3	53	83	4	142	41	11	22	24	1.87
8317--8361	15	3.0	15	90	0	63	48	15	17	17	1.81
8324--8474	52	2.9	53	81	7	184	41	12	19	25	1.87
8459--8580	37	3.3	37	73	5	131	36	8	19	35	1.82
8448--8687	73	3.4	73	79	11	273	40	9	17	32	1.82
8452--8617	37	4.5	36	71	8	120	39	10	18	31	1.84
8701--8743	21	2.0	21	81	0	50	37	11	20	30	1.89
8746--8785	21	1.9	22	85	10	57	45	10	12	32	1.75
10392--10421	12	2.4	13	88	11	53	40	23	6	30	1.80
15778--15803	12	2.2	12	100	0	52	0	23	0	76	0.78
17928--17965	16	2.4	16	82	8	51	47	0	0	52	1.00
20168--20262	47	2.0	47	86	10	131	35	8	18	36	1.82
25992--26042	20	2.5	20	93	0	84	23	19	21	35	1.96
26090--26537	98	4.8	90	66	12	253	36	15	21	26	1.93
26043--26537	186	2.7	186	92	0	828	36	15	22	26	1.93
26815--26852	16	2.4	16	86	8	51	47	0	0	52	1.00
26894--26954	25	2.5	25	97	2	115	24	26	26	22	2.00
26894--26962	25	2.8	23	93	4	75	24	27	26	21	1.99
30123--30319	44	5.1	42	63	30	114	25	1	11	61	1.39
30123--30321	76	2.6	76	94	0	337	25	1	11	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30935--30991	29	2.0	28	82	3	69	26	3	1	68	1.15
31475--31596	64	1.9	64	86	1	174	25	19	26	28	1.99
32300--32335	18	1.9	19	88	5	56	44	2	2	50	1.31
32271--32360	31	3.0	29	75	18	85	48	2	3	45	1.31
32265--32401	13	10.5	13	68	16	70	48	2	4	45	1.34
32270--32421	13	10.2	15	68	18	61	46	3	5	44	1.42
32443--32484	17	2.5	17	85	11	52	40	0	0	59	0.97
32596--32633	20	2.0	20	89	5	60	50	0	23	26	1.50
32565--32627	27	2.3	27	83	5	74	46	0	26	26	1.54
32945--32991	21	2.2	20	82	10	58	57	21	0	21	1.41
33024--33088	7	9.3	7	77	0	58	50	29	0	20	1.48
33024--33084	21	2.9	21	87	0	86	50	29	0	19	1.48
33437--33484	20	2.5	20	86	6	64	47	6	6	39	1.54
33457--33508	15	3.4	15	89	2	77	51	7	1	38	1.42
33566--33609	7	6.3	7	83	0	52	54	31	0	13	1.39
33566--33609	21	2.1	21	91	0	70	54	31	0	13	1.39
33065--34005	521	1.8	521	94	2	1667	41	11	9	37	1.73
34082--34160	7	11.3	7	79	5	72	54	24	0	21	1.45
34324--34373	23	2.1	24	92	3	84	50	4	0	46	1.20
34643--34700	16	3.6	16	80	0	62	53	12	17	17	1.73
34749--34818	22	3.0	23	67	18	56	17	17	31	34	1.93
36584--36610	14	1.9	14	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57311--57349	12	3.1	12	82	13	51	28	15	23	33	1.95
58800--58826	14	1.9	14	100	0	54	40	0	7	51	1.30
58948--58988	22	1.9	21	90	5	64	26	0	4	68	1.10
59889--59950	14	4.4	14	83	0	61	16	11	14	58	1.64
59892--59930	18	2.2	18	86	9	53	15	12	12	58	1.62
60132--60187	23	2.4	23	87	0	85	10	12	19	57	1.64
61182--61251	20	3.5	20	67	18	63	24	22	20	32	1.97
61123--61262	41	3.4	41	88	1	217	25	20	22	30	1.98
67298--67336	19	1.9	19	85	10	51	28	0	15	56	1.40
73945--73996	20	2.6	20	75	6	52	34	13	26	25	1.93
74440--74514	15	5.0	15	71	12	55	29	4	22	44	1.71
74445--74517	30	2.4	30	90	0	110	28	5	21	43	1.75
81374--81452	30	2.6	30	87	0	104	30	6	22	40	1.79
85972--86013	21	2.0	21	90	9	68	35	9	9	45	1.69
86177--86222	21	2.2	20	85	7	65	26	10	17	45	1.81
85884--87175	198	6.5	199	85	3	1611	38	13	14	33	1.85
85884--87165	397	3.2	394	86	3	1652	38	13	13	33	1.85

Tables:   1

The End!