genome.fa.s4980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004980.1 Hibiscus syriacus cultivar Beakdansim tig00011178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108110

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863--922	27	2.1	30	84	9	81	30	3	0	66	1.07
863--922	29	2.1	28	82	14	70	30	3	0	66	1.07
2328--2362	15	2.3	15	90	0	52	48	5	8	37	1.58
6713--6775	32	2.0	32	93	0	108	14	9	36	39	1.78
6699--6777	32	2.3	35	78	17	101	11	8	39	40	1.72
8145--8216	38	1.9	38	85	2	101	47	4	0	48	1.21
9325--9362	19	2.0	20	85	15	53	50	13	18	18	1.78
12878--12993	57	2.0	57	81	1	133	43	15	6	33	1.73
12893--13107	58	3.7	56	70	10	139	40	13	8	37	1.75
17318--17363	2	23.0	2	100	0	92	50	0	0	50	1.00
17489--17568	29	2.8	28	77	21	76	71	3	3	21	1.18
17652--17694	21	2.0	21	86	4	59	60	6	9	23	1.51
19180--19371	36	5.3	35	69	12	129	40	11	20	27	1.88
19164--19547	73	5.3	72	88	3	475	38	11	18	31	1.86
19169--19336	37	4.6	37	71	9	139	38	13	20	27	1.90
19169--19555	145	2.7	146	85	4	512	39	11	19	29	1.87
19655--20303	6	108.5	6	99	0	1275	16	0	33	49	1.46
22217--22388	89	1.9	89	83	4	222	33	14	17	34	1.90
24147--24355	76	2.8	77	87	3	282	20	22	32	24	1.98
26920--26959	21	1.9	21	89	0	62	10	25	40	25	1.86
30811--30850	21	1.9	21	85	10	55	35	10	2	52	1.48
32774--32982	76	2.8	77	87	3	282	20	22	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35526--35569	2	22.0	2	100	0	88	50	0	0	50	1.00
35870--35911	22	2.0	20	86	9	57	61	7	9	21	1.50
36600--36648	19	2.5	20	77	19	57	65	10	8	16	1.46
39243--39322	41	2.0	41	82	9	101	21	25	43	10	1.83
42325--42391	30	2.2	30	83	0	89	25	35	13	25	1.92
42785--42888	45	2.3	45	86	0	145	25	22	32	20	1.97
45958--46347	186	2.1	184	90	3	615	42	3	7	46	1.49
48640--48724	22	3.9	22	83	7	102	27	21	20	31	1.97
51064--51101	18	2.2	18	85	4	51	28	26	15	28	1.96
51688--51762	32	2.3	33	82	15	95	50	21	13	14	1.77
53208--53243	5	7.2	5	93	0	63	80	0	2	16	0.83
53213--53283	20	3.9	19	75	14	69	73	0	5	21	1.04
57134--57163	2	15.0	2	100	0	60	50	0	0	50	1.00
57329--57377	19	2.6	19	93	0	80	32	6	24	36	1.80
57329--57390	19	3.2	19	86	2	70	35	4	24	35	1.77
57716--57747	6	5.3	6	100	0	64	0	15	50	34	1.45
60551--60639	29	3.1	29	96	0	169	34	16	13	34	1.88
65077--65223	36	4.1	35	91	5	231	16	23	25	34	1.95
67528--67586	15	4.0	16	79	18	58	71	0	0	28	0.87
67506--67570	21	3.1	21	82	10	64	75	3	0	21	0.94
67558--67590	5	6.6	5	100	0	66	63	0	0	36	0.95
71286--71346	21	2.9	21	92	0	95	6	22	22	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71933--71973	3	13.7	3	80	19	50	68	2	0	29	1.03
72664--72831	45	3.8	44	78	3	165	41	19	16	23	1.90
72650--72832	90	2.0	91	83	5	228	42	19	16	21	1.90
72803--74107	38	34.2	38	84	4	1599	40	16	17	25	1.90
73619--73718	49	2.0	49	86	0	137	43	15	17	25	1.87
82035--82101	21	3.2	20	89	4	89	11	13	22	52	1.73
82832--82891	24	2.5	23	81	10	59	33	11	1	53	1.47
82862--82902	18	2.2	19	91	4	66	39	14	0	46	1.45
82881--82955	24	3.1	25	71	22	70	40	13	0	46	1.43
82902--82960	22	2.6	22	76	10	66	40	13	1	44	1.54
82974--83007	16	2.2	16	89	5	52	79	8	0	11	0.94
83464--83563	45	2.2	45	89	0	146	41	20	14	25	1.89
84209--84386	44	4.0	44	88	1	257	24	21	11	41	1.87
84209--84386	89	2.0	88	87	3	259	24	21	11	41	1.87
86766--86926	73	2.2	75	83	8	199	33	2	8	55	1.44
87560--87602	18	2.4	18	88	7	61	20	4	0	74	1.00
94989--95453	86	5.4	86	85	0	574	32	24	21	22	1.98
96102--96251	76	1.9	78	85	5	207	32	2	11	54	1.50
96881--96924	18	2.4	19	88	3	63	20	4	0	75	0.98
96964--97028	18	3.5	18	76	15	60	20	3	1	75	1.02
96956--97071	38	3.2	37	72	14	100	21	6	0	71	1.13
96976--97026	22	2.3	22	83	9	68	17	3	1	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96976--97035	11	5.5	11	72	7	50	16	5	1	76	1.04
96969--97026	22	2.6	22	83	8	64	18	3	1	75	1.03
97030--97126	42	2.3	41	76	13	99	26	6	0	67	1.14
97117--97147	7	4.4	7	95	0	53	48	0	0	51	1.00
99061--99504	56	8.0	56	88	2	628	34	19	11	35	1.87
104833--105422	56	10.6	56	89	2	809	35	17	11	35	1.85
104833--105422	111	5.3	111	87	3	821	35	17	11	35	1.85
104833--105422	167	3.5	166	85	3	776	35	17	11	35	1.85

Tables:   1

The End!