genome.fa.s4982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004982.1 Hibiscus syriacus cultivar Beakdansim tig00011180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72508

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911--953	20	2.2	20	86	0	59	32	18	13	34	1.90
1560--1593	16	2.1	16	100	0	68	47	11	17	23	1.81
4562--4642	34	2.4	33	83	6	92	29	3	4	61	1.34
4570--4667	17	5.8	17	74	11	67	30	5	4	60	1.37
6860--6899	20	2.0	20	100	0	80	25	15	30	30	1.95
6911--6969	24	2.5	24	83	2	84	18	23	23	33	1.97
8565--8589	12	2.1	12	100	0	50	36	8	48	8	1.62
9562--9766	47	4.4	47	93	2	328	33	20	6	39	1.79
9882--9997	61	1.9	61	89	0	178	30	25	17	27	1.97
13509--13558	21	2.4	20	75	18	57	4	18	0	78	0.91
13521--13611	5	18.8	5	70	18	50	2	16	1	80	0.88
13523--13606	9	9.5	8	76	21	71	2	17	0	79	0.83
13524--13586	17	3.7	16	81	12	72	3	17	0	79	0.86
13522--13590	27	2.7	26	80	13	79	2	17	0	79	0.85
13509--13560	22	2.5	20	84	6	68	3	17	0	78	0.89
13522--13606	36	2.4	36	84	7	111	2	17	0	80	0.83
13526--13602	26	2.9	27	74	12	70	2	19	0	77	0.88
16441--16645	47	4.4	47	88	2	292	33	18	7	40	1.80
16754--16868	61	1.9	61	85	0	158	30	25	17	26	1.97
23372--23419	15	3.6	15	69	30	54	29	10	20	39	1.86
23374--23419	24	1.9	24	100	0	92	28	8	21	41	1.83
24104--24148	23	2.0	23	91	4	74	28	24	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24087--24199	21	5.2	21	71	16	79	31	22	19	26	1.97
24743--24870	55	2.3	55	84	4	170	31	23	16	28	1.96
28404--28442	15	2.6	15	100	0	78	30	28	23	17	1.97
30996--31057	21	2.9	21	71	20	56	32	27	20	19	1.97
31001--31069	21	3.2	21	69	18	52	30	27	20	21	1.98
31659--31787	55	2.3	56	84	9	176	28	23	19	28	1.98
32603--32703	23	4.3	23	76	10	98	21	23	19	34	1.96
32603--32703	47	2.1	47	87	3	141	21	23	19	34	1.96
35404--35448	23	2.0	22	83	12	56	42	0	4	53	1.21
38242--38292	25	2.0	25	100	0	102	43	7	0	49	1.32
44150--44406	144	1.8	142	83	5	340	47	8	7	37	1.60
44414--44465	27	1.9	27	84	0	68	59	1	0	38	1.08
44585--44633	19	2.5	20	83	6	64	48	2	0	48	1.12
45932--45970	3	13.0	3	100	0	78	66	0	0	33	0.92
46142--47256	76	14.8	76	96	0	1945	34	21	19	24	1.96
47931--48007	22	3.5	22	96	0	145	40	14	11	33	1.82
52802--52882	17	4.9	16	82	13	101	6	18	0	75	1.01
52791--52884	7	12.1	7	72	22	64	5	18	0	76	0.97
52801--52882	33	2.5	33	93	2	137	6	18	0	75	1.00
58895--58946	27	1.9	27	88	0	77	61	0	0	38	0.96
59066--59114	19	2.5	20	83	6	64	48	2	0	48	1.12
60412--60444	3	11.0	3	93	0	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67299--67557	128	2.0	125	83	5	324	30	15	22	32	1.94

Tables:   1

The End!