genome.fa.s5000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005000.1 Hibiscus syriacus cultivar Beakdansim tig00011221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93699

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928--1128	55	3.7	55	94	1	325	30	19	20	29	1.97
1914--1974	28	2.2	29	82	8	81	21	21	27	29	1.98
2297--2334	17	2.4	16	91	8	60	39	7	13	39	1.73
2303--2337	17	2.1	17	100	0	70	34	11	17	37	1.85
3949--4086	33	4.3	33	71	22	98	52	2	3	41	1.34
11793--11834	22	1.9	22	90	0	66	40	9	16	33	1.81
16361--16399	2	19.5	2	100	0	78	48	0	0	51	1.00
16985--17034	22	2.4	22	86	6	68	38	10	18	34	1.84
18942--19004	26	2.4	26	100	0	126	19	12	4	63	1.46
21855--21887	15	2.2	15	89	10	50	63	3	0	33	1.10
22940--23008	36	1.9	36	87	0	102	27	7	27	37	1.83
23034--23077	19	2.3	19	92	0	70	25	0	27	47	1.52
23503--23541	20	1.9	20	89	5	60	28	20	12	38	1.89
23528--23586	20	2.9	21	92	7	95	35	25	10	28	1.89
23529--23665	40	3.4	40	78	4	123	33	22	9	34	1.87
24459--24492	12	2.8	12	90	0	50	55	29	0	14	1.40
24616--24671	24	2.3	24	87	0	85	25	17	17	39	1.92
26932--26972	18	2.3	18	86	0	55	53	24	2	19	1.57
27148--27185	20	1.9	20	88	0	58	28	18	21	31	1.97
27196--27238	20	2.2	20	86	0	59	18	18	23	39	1.92
27202--27243	20	2.1	20	90	0	66	14	14	26	45	1.83
27306--27452	64	2.3	64	92	0	240	51	17	2	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28811--28881	21	3.4	20	80	7	88	21	21	36	21	1.95
28811--28932	42	2.9	42	86	4	167	24	18	36	20	1.95
28811--28928	21	5.7	20	74	12	87	23	18	36	21	1.95
29211--29262	21	2.5	21	87	0	68	32	26	19	21	1.97
29224--29346	63	2.0	63	80	3	140	32	31	12	23	1.91
31074--31118	20	2.2	20	100	0	90	13	13	17	55	1.69
31074--31133	20	3.0	20	90	0	57	20	11	15	53	1.72
31657--31707	20	2.5	20	93	0	84	21	17	21	39	1.93
31732--31777	21	2.2	21	96	0	65	36	17	26	19	1.94
33300--33355	28	2.0	28	89	0	85	25	25	17	32	1.97
35750--36054	77	3.9	77	85	3	385	36	18	12	32	1.88
40868--40944	33	2.3	33	93	4	129	40	0	0	59	0.97
40888--40958	33	2.2	33	82	5	81	42	0	1	56	1.08
41106--41196	24	3.6	24	77	20	89	53	0	2	43	1.12
41495--41561	31	2.2	31	91	0	107	50	7	11	29	1.66
41507--41568	31	2.0	31	93	0	106	51	6	9	32	1.60
45002--45029	2	14.0	2	100	0	56	50	0	0	50	1.00
48022--48255	57	4.1	58	98	1	447	20	22	18	38	1.94
48348--48429	41	2.0	42	85	7	114	47	12	12	28	1.76
50218--50257	14	2.9	14	84	0	53	12	12	17	57	1.65
50353--50418	27	2.5	26	74	16	62	65	7	1	25	1.28
50449--50492	10	4.4	10	85	0	61	6	9	20	63	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50449--50516	20	3.4	20	77	4	66	8	10	17	63	1.51
50449--50509	30	2.0	30	83	0	77	9	11	18	60	1.57
57317--57361	24	1.9	23	81	4	54	51	2	2	44	1.26
57337--57370	17	1.9	18	88	5	52	52	8	0	38	1.33
61299--61363	29	2.2	29	100	0	130	35	24	13	26	1.93
67618--67665	21	2.3	20	82	13	53	43	4	2	50	1.33
74651--74692	6	7.2	6	84	13	52	83	0	2	14	0.75
74744--74789	18	2.7	17	86	6	58	73	2	0	23	0.94
74761--74789	12	2.3	13	94	5	51	75	0	0	24	0.80
75419--75588	76	2.2	76	87	4	245	57	10	2	30	1.45
77146--77259	53	2.2	52	93	1	192	20	22	16	40	1.91
77355--77392	19	2.1	18	90	5	58	81	5	2	10	0.94
81275--81307	15	2.2	15	94	0	57	6	24	24	45	1.75
83072--83100	12	2.3	13	94	5	51	75	0	0	24	0.80
83663--83709	21	2.3	20	78	10	51	53	21	2	23	1.57
83736--83873	75	1.9	73	89	6	215	57	11	2	28	1.45
85383--85422	22	1.9	21	85	10	55	55	2	20	22	1.56
85677--85706	12	2.5	12	100	0	60	36	0	0	63	0.95
85689--85976	77	3.8	77	85	0	353	35	10	17	37	1.83
85689--86005	154	2.1	154	84	5	410	35	9	17	37	1.83
85837--85961	40	3.2	39	65	13	96	35	8	20	35	1.84
86095--86144	20	2.5	20	96	3	93	44	6	14	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86196--86233	20	1.9	20	94	0	67	39	18	7	34	1.80
86198--86450	73	3.4	73	70	13	224	43	13	10	32	1.78
86115--86444	154	2.1	155	88	2	484	41	12	10	36	1.76
86668--86890	77	2.9	77	89	0	311	36	13	13	36	1.84
87155--87326	74	2.3	73	78	6	177	37	12	6	44	1.68
87396--87625	81	2.9	77	74	11	223	37	15	8	38	1.77

Tables:   1

The End!