genome.fa.s5001.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005001.1 Hibiscus syriacus cultivar Beakdansim tig00011222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75571

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2459--2770	116	2.7	114	77	10	325	37	14	24	24	1.93
2879--3001	38	3.3	38	80	11	114	32	17	9	39	1.83
2894--3007	38	3.1	36	81	9	115	33	15	8	42	1.78
2939--3015	38	2.1	37	82	2	91	36	16	10	36	1.83
2995--3026	14	2.2	15	94	5	57	18	21	15	43	1.87
5173--5209	3	12.3	3	100	0	74	0	35	0	64	0.94
6733--6766	3	11.3	3	87	0	50	2	32	2	61	1.26
8400--8425	12	2.2	12	100	0	52	42	15	0	42	1.47
15106--15144	19	2.0	20	85	14	55	76	7	0	15	0.99
15106--15162	21	2.8	20	82	15	57	73	7	1	17	1.14
16828--17160	98	3.4	98	91	0	533	36	19	12	31	1.89
17159--18027	39	22.3	39	88	1	1195	35	16	16	30	1.92
18030--18419	76	5.1	76	85	3	518	39	12	16	32	1.85
18029--18303	39	7.2	40	63	18	118	40	11	15	32	1.83
18373--18483	36	3.0	36	75	8	116	41	13	16	28	1.86
24016--24065	26	1.9	26	100	0	100	56	20	8	16	1.65
25933--25961	2	14.5	2	100	0	58	51	0	0	48	1.00
26237--26323	17	5.2	17	76	1	77	29	11	17	41	1.84
29713--29764	17	3.1	17	80	0	59	36	13	7	42	1.73
31402--31454	26	2.0	26	88	0	79	37	20	1	39	1.64
31691--31788	21	4.8	20	75	10	81	38	21	18	21	1.93
31755--32004	20	12.5	20	84	3	261	37	24	18	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32687--32732	24	2.0	23	87	12	67	26	15	21	36	1.93
32907--32931	12	2.1	12	100	0	50	72	0	28	0	0.86
35268--35365	19	5.4	19	83	13	134	14	21	17	46	1.83
35249--35365	53	2.2	52	96	1	216	13	23	17	45	1.84
35472--35508	14	2.6	14	91	0	65	45	21	0	32	1.52
37488--37544	14	3.7	14	77	20	60	45	22	21	10	1.82
37469--37561	33	2.8	33	95	0	168	47	21	20	10	1.80
37432--37566	19	7.6	19	76	16	128	45	23	19	11	1.82
37562--37690	19	7.3	19	73	17	107	9	16	27	46	1.77
37562--37653	33	2.8	33	88	3	132	8	17	27	46	1.77
37734--38207	93	5.1	93	99	0	930	45	18	12	22	1.83
39912--40001	14	5.7	14	74	23	81	41	24	25	8	1.84
39904--40018	33	3.5	33	95	0	203	44	21	24	9	1.82
39911--40023	19	6.8	18	72	23	88	42	23	24	9	1.84
40035--40091	14	3.7	14	75	20	60	8	24	22	43	1.81
40019--40099	33	2.5	33	93	0	135	8	22	23	45	1.79
40076--40151	21	3.7	21	85	3	109	11	25	18	44	1.83
40075--40152	41	1.9	41	94	0	138	12	25	17	43	1.85
40231--40301	33	2.2	33	89	0	106	47	16	23	11	1.79
40483--40537	22	2.5	22	81	0	74	20	16	40	23	1.91
40659--40740	40	2.1	40	81	6	96	23	15	23	37	1.93
40682--40874	20	9.6	20	83	3	219	19	20	25	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40861--40943	21	4.0	21	73	6	78	25	16	24	33	1.96
40841--40939	42	2.4	43	77	11	100	21	18	23	37	1.94
41114--41146	16	1.9	18	88	11	52	57	0	3	39	1.14
41138--41163	2	13.0	2	100	0	52	50	0	0	50	1.00
44957--45000	21	2.1	21	83	8	54	40	0	2	56	1.11
45121--45272	20	7.6	20	73	10	105	44	22	18	15	1.87
45360--45389	6	5.0	6	91	0	51	33	46	16	3	1.64
45419--45461	6	7.2	6	100	0	86	0	16	48	34	1.46
45541--45718	20	8.8	20	85	6	214	23	24	16	35	1.94
45753--45806	20	2.7	20	94	0	90	11	18	18	51	1.74
45793--45843	19	2.6	20	90	3	77	15	17	23	43	1.88
47444--47478	17	2.1	17	94	0	61	34	20	11	34	1.88
47461--47904	131	3.4	131	79	3	471	39	16	11	32	1.84
48905--48941	19	1.9	19	88	0	56	10	10	0	78	0.97
49432--49494	25	2.6	25	97	2	119	28	14	4	52	1.62
49839--49884	3	15.3	3	100	0	92	65	0	0	34	0.93
50023--50889	133	6.5	134	81	4	882	31	15	20	32	1.94
50020--50889	265	3.3	264	82	5	880	31	15	20	32	1.94
50922--51167	133	1.8	133	86	3	352	36	13	17	32	1.89
51181--51409	92	2.5	92	86	1	289	31	14	21	32	1.93
57027--57067	20	2.0	20	86	9	57	36	24	2	36	1.69
58809--59309	131	3.8	131	83	2	567	42	15	10	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58809--59309	263	1.9	262	82	2	630	42	15	10	32	1.81
60311--60354	21	2.1	21	87	4	63	13	6	2	77	1.07
61231--61291	3	20.3	3	100	0	122	65	0	0	34	0.93
63084--63180	36	2.7	36	85	7	135	27	36	5	30	1.79
68754--68850	36	2.7	36	87	4	126	26	36	6	30	1.81
69562--69613	25	2.1	25	100	0	104	34	34	7	23	1.83
71844--72052	65	3.2	64	79	9	194	33	22	17	26	1.96
71892--72052	65	2.5	64	86	7	220	32	21	17	27	1.96

Tables:   1

The End!