Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005009.1 Hibiscus syriacus cultivar Beakdansim tig00011242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77795

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5629--5696
23
3.0
23
70
8
57
35
1
2
60
1.21
6134--6179
23
1.9
25
86
8
69
36
2
6
54
1.39
6461--6498
14
2.7
14
100
0
76
50
0
7
42
1.31
17293--17359
20
3.3
20
93
0
116
20
7
25
46
1.77
18243--18291
24
2.1
24
84
3
64
16
0
32
51
1.45
19048--19147
42
2.4
41
78
5
103
33
21
20
26
1.97
19289--19395
42
2.6
41
82
4
126
31
20
20
27
1.97
18737--19665
241
3.9
241
89
1
1339
33
18
17
31
1.94
19520--19587
20
3.4
19
74
11
55
29
25
23
22
1.99
19467--19824
176
2.0
176
86
3
497
33
20
18
27
1.96
19888--20065
56
3.1
56
83
7
225
40
16
11
31
1.84
19926--20184
54
4.7
54
73
12
161
40
16
10
32
1.82
22015--22058
3
14.7
3
90
0
70
65
0
2
31
1.05
27176--27258
21
3.9
22
70
17
68
26
18
32
22
1.97
27947--28004
15
3.9
15
77
4
64
81
3
3
12
0.95
40196--40305
56
2.0
56
80
10
127
18
9
13
59
1.60
42816--42854
3
13.0
3
100
0
78
33
0
0
66
0.92
42962--42991
6
5.2
6
96
4
53
33
50
0
16
1.46
50104--50159
24
2.4
24
84
3
69
78
0
16
5
0.92
50121--50163
17
2.5
17
84
0
59
76
0
18
4
0.95
50838--50917
29
2.8
29
88
0
115
22
13
18
45
1.85
51888--52453
233
2.4
232
85
1
756
33
15
17
33
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55218--55583
134
2.7
133
82
1
417
30
20
17
30
1.96
55779--55812
3
11.3
3
87
0
50
29
0
5
64
1.17
57938--58229
160
1.8
160
92
2
498
30
5
14
49
1.65
59374--59488
40
3.0
39
79
15
116
43
0
12
43
1.47
59371--59488
39
3.0
39
82
16
129
44
0
11
43
1.47
59520--59566
23
2.0
24
91
8
78
48
4
10
36
1.57
59591--59681
35
2.5
35
89
3
128
43
4
8
42
1.55
67455--67853
202
2.0
202
81
4
475
32
18
21
28
1.97
68250--68477
39
5.9
38
77
10
189
44
6
9
39
1.62
68439--68503
32
2.0
32
85
11
89
44
7
10
36
1.68
68479--68517
14
2.8
14
100
0
78
43
12
7
35
1.72
68505--68586
35
2.3
36
89
2
121
41
3
9
45
1.55
68624--68688
13
4.9
13
72
14
53
33
3
3
60
1.28
72777--72809
15
2.2
15
100
0
66
48
6
0
45
1.27

Tables:   1

The End!