genome.fa.s502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000502.1 Hibiscus syriacus cultivar Beakdansim tig00000959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88957

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737--807	21	3.3	22	70	20	60	30	23	18	26	1.97
746--844	21	4.7	21	69	14	69	31	26	18	24	1.97
901--992	39	2.3	39	94	1	157	32	15	8	43	1.77
1395--1536	54	2.6	54	90	3	225	30	23	19	26	1.98
6001--6138	73	1.9	73	92	0	231	26	16	22	34	1.95
7284--7319	2	18.0	2	100	0	72	50	0	0	50	1.00
7723--7794	21	3.4	22	70	12	69	30	23	18	27	1.97
7732--7831	21	4.7	22	73	18	79	32	29	17	22	1.96
7965--8011	21	2.3	20	85	3	58	36	17	6	40	1.75
8336--8478	54	2.6	54	91	2	234	30	23	18	27	1.98
9333--9365	17	1.9	17	93	0	57	48	18	6	27	1.71
12066--12105	22	1.9	21	85	10	55	52	0	0	47	1.00
12897--12925	2	14.5	2	100	0	58	0	48	0	51	1.00
22519--22751	83	2.8	81	78	6	236	28	15	21	34	1.94
25981--26313	43	7.8	42	80	3	317	27	21	18	32	1.97
38009--38073	23	2.9	22	84	8	78	10	7	4	76	1.13
38012--38064	22	2.4	22	87	9	72	9	7	5	77	1.12
38144--38175	15	2.0	17	88	11	50	50	6	12	31	1.65
49970--50338	20	18.5	20	84	5	451	34	26	18	20	1.96
51021--51067	24	2.0	24	87	8	69	25	14	21	38	1.92
51242--51266	12	2.1	12	100	0	50	72	0	28	0	0.86
53548--53840	19	16.4	19	83	14	392	47	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53576--53862	52	5.4	55	90	8	356	46	17	21	14	1.83
53548--53862	128	2.6	128	88	7	462	46	18	20	14	1.83
53869--53970	19	5.6	19	84	12	142	15	23	16	44	1.86
53935--53978	19	2.3	19	88	0	61	20	20	13	45	1.85
54077--54113	14	2.6	14	91	0	65	45	21	0	32	1.52
56070--56126	14	3.7	14	77	20	60	45	22	21	10	1.82
56051--56143	33	2.8	33	95	0	168	47	21	20	10	1.80
56014--56148	19	7.6	19	76	16	128	45	23	19	11	1.82
56144--56271	19	7.3	19	73	19	116	8	17	28	45	1.78
56144--56234	33	2.8	33	91	5	141	7	18	28	45	1.77
56315--56599	93	3.1	93	95	3	531	46	18	12	22	1.83
58305--58394	14	5.7	14	74	23	81	42	23	25	8	1.83
58297--58411	33	3.5	33	95	0	212	45	20	24	9	1.81
58304--58416	19	6.8	18	72	23	88	43	22	24	9	1.83
58428--58482	14	3.6	14	73	21	56	9	25	23	41	1.83
58412--58482	33	2.2	33	94	0	124	8	22	25	43	1.81
58423--58504	33	2.5	33	89	2	119	9	25	21	42	1.84
58435--58523	20	4.8	20	72	19	75	12	24	19	43	1.85
58603--58673	33	2.2	33	92	0	115	47	18	22	11	1.80
58855--58909	22	2.5	22	81	0	74	20	16	40	23	1.91
59055--59247	20	9.6	20	82	5	219	19	19	25	35	1.95
59055--59247	60	3.2	60	83	0	251	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59303--59354	20	2.6	20	96	0	95	21	13	26	38	1.90
60867--60945	31	2.5	31	93	4	133	31	17	11	39	1.85
61181--61314	59	2.2	60	80	10	150	30	18	15	35	1.92
61792--61846	22	2.5	22	96	0	101	21	43	16	18	1.88
62220--62257	20	1.9	20	88	0	58	15	13	21	50	1.78
63676--63774	42	2.4	42	82	3	119	28	32	18	21	1.96
64075--64127	21	2.5	21	96	0	97	35	13	20	30	1.91
64176--64217	12	3.5	12	83	6	50	23	0	7	69	1.13
64358--64455	42	2.4	43	84	6	132	23	33	19	23	1.97
64385--64455	21	3.4	21	78	3	81	23	33	21	21	1.97
65957--66003	20	2.3	21	71	10	53	38	19	23	19	1.93
66036--66109	33	2.4	30	88	8	105	33	18	16	31	1.93
69583--69630	18	2.6	18	83	6	60	35	12	22	29	1.91
69624--69816	20	9.6	20	71	11	74	28	16	23	31	1.96
69706--69751	21	2.2	21	88	0	65	39	19	23	17	1.92
70585--72519	972	2.0	966	98	0	3735	31	18	13	37	1.89

Tables:   1

The End!