genome.fa.s5024.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005024.1 Hibiscus syriacus cultivar Beakdansim tig00011277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  902903

Tables:   1   2   3   

This is table  3  of  3  ( 355 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452148--452195	21	2.3	21	96	0	87	25	8	29	37	1.85
457135--457168	17	2.0	17	88	11	52	14	5	8	70	1.31
467298--467350	20	2.7	20	82	11	72	33	22	24	18	1.97
476134--476387	133	1.9	132	90	2	402	46	13	9	30	1.75
482662--482718	24	2.4	24	93	0	96	28	17	35	19	1.94
484330--484430	13	7.9	12	70	12	76	10	5	21	61	1.50
484350--484418	20	3.5	20	67	11	61	8	4	23	63	1.41
484331--484435	39	2.7	39	97	1	194	10	5	22	60	1.50
487769--487799	6	5.3	6	92	7	55	16	16	0	67	1.23
490529--490576	3	15.7	3	82	4	60	62	2	0	35	1.07
490897--490992	34	2.7	36	84	11	135	33	9	16	40	1.81
490930--491009	34	2.5	31	84	11	92	35	10	21	33	1.87
490995--491419	36	12.1	36	77	13	404	39	13	19	27	1.90
491066--491349	100	2.8	100	89	1	406	39	13	19	28	1.89
491124--491281	50	3.2	50	62	20	121	38	12	19	29	1.89
491608--491946	124	2.7	124	84	1	412	27	17	23	31	1.97
492181--492260	34	2.4	34	97	0	151	22	18	23	35	1.96
492581--492669	32	2.8	31	76	6	88	31	22	14	31	1.94
493726--493801	30	2.6	30	76	14	77	2	18	5	73	1.14
493750--493806	22	2.6	22	72	10	55	1	14	5	78	0.99
493766--493804	12	3.3	12	82	7	53	0	17	5	76	0.96
495727--495764	19	2.0	20	85	15	53	78	2	10	7	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498154--498197	22	2.0	22	95	0	79	25	27	29	18	1.98
499178--499220	15	2.9	15	85	0	59	46	16	6	30	1.73
499361--499734	187	2.0	186	94	1	651	42	3	8	45	1.51
502301--502421	64	1.9	63	86	1	170	35	22	17	24	1.95
503115--503187	23	3.2	23	90	0	119	20	28	24	26	1.99
510078--510136	23	2.6	23	89	5	84	20	27	23	28	1.99
536339--536583	59	4.2	59	90	4	354	30	21	11	36	1.89
539013--539062	26	2.0	24	88	7	73	58	10	0	32	1.31
539450--539800	59	5.9	59	90	0	513	31	21	11	36	1.89
540207--540323	53	2.2	53	89	0	171	31	17	18	31	1.95
547050--547075	3	8.7	3	100	0	52	65	0	0	34	0.93
547074--547102	3	9.7	3	100	0	58	34	0	0	65	0.93
549873--549939	20	3.3	20	93	0	116	55	1	38	4	1.29
582964--583115	44	3.5	42	81	7	153	33	26	21	19	1.96
582964--583132	44	3.9	43	74	9	137	34	25	20	20	1.96
588796--588951	44	3.5	44	82	0	204	30	22	23	23	1.99
588796--588969	44	4.0	44	80	0	195	32	21	22	24	1.98
595975--596069	42	2.3	42	81	7	113	33	27	15	23	1.95
595991--596069	21	3.8	21	75	11	81	34	26	15	24	1.94
599116--599188	30	2.4	30	81	6	85	39	9	16	34	1.81
601929--602528	202	3.0	201	95	1	1075	29	17	12	40	1.87
606117--606171	27	2.0	27	82	6	67	65	1	9	23	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611503--611528	12	2.2	12	100	0	52	0	19	0	80	0.71
615580--615724	65	2.2	64	82	11	163	29	25	17	27	1.97
615629--615787	65	2.5	64	83	3	176	30	23	16	28	1.96
617836--617875	20	2.0	21	85	14	57	37	15	5	42	1.68
617835--617879	20	2.2	20	80	11	56	40	13	4	42	1.64
618628--618716	20	4.4	20	78	7	90	43	2	0	53	1.13
618630--618723	3	32.3	3	72	6	68	42	2	0	55	1.12
619997--620026	14	2.1	14	100	0	60	43	0	6	50	1.28
627084--627129	18	2.6	18	92	0	74	47	13	6	32	1.68
627185--627226	17	2.5	17	84	0	57	42	11	14	30	1.81
630497--630582	42	2.0	42	86	4	120	31	17	19	31	1.95
630506--630593	42	2.1	42	85	4	115	31	13	19	35	1.91
630541--630753	80	2.7	79	88	4	302	31	16	20	31	1.94
631211--631244	14	2.3	15	90	5	52	47	0	0	52	1.00
631211--631256	20	2.3	20	92	0	74	45	2	0	52	1.13
631216--631290	20	3.7	20	78	5	78	44	2	1	52	1.23
631218--631312	3	32.3	3	66	8	52	41	2	2	54	1.24
632587--632620	2	17.0	2	87	0	50	44	0	5	50	1.26
633603--633633	13	2.4	13	94	0	53	35	3	9	51	1.51
633672--633707	18	2.1	18	94	5	65	50	0	5	44	1.25
635028--635384	178	2.0	178	96	1	653	33	20	23	22	1.97
657771--657811	18	2.3	18	88	12	59	34	0	19	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659221--659260	18	2.1	20	86	9	57	75	5	10	10	1.19
663982--664231	54	4.6	54	83	3	306	30	16	18	35	1.92
663982--664229	107	2.3	108	84	2	311	31	15	18	35	1.92
670961--671151	54	3.6	54	84	1	258	31	17	19	31	1.95
676792--676874	42	2.0	42	92	0	139	24	16	28	30	1.97
679870--679907	20	2.0	19	85	10	51	28	15	31	23	1.96
681738--681762	12	2.1	12	100	0	50	0	0	8	92	0.40
689668--689805	35	3.9	35	91	0	222	17	18	19	44	1.86
694096--694120	2	12.5	2	100	0	50	52	0	0	48	1.00
700605--700638	17	1.9	18	88	5	52	61	2	0	35	1.11
709992--710044	24	2.2	25	83	10	65	60	13	0	26	1.33
710749--710857	52	2.1	52	100	0	218	33	12	24	29	1.93
716809--716867	29	2.0	29	96	0	109	18	22	16	42	1.89
719859--719963	19	5.4	20	84	5	119	47	21	17	13	1.81
720330--720371	22	1.9	22	95	0	75	23	14	38	23	1.92
720548--720641	20	4.7	20	90	0	143	25	21	25	27	1.99
720555--720662	20	5.4	20	87	3	92	25	20	23	30	1.98
720555--720723	40	4.2	40	77	6	117	28	20	24	26	1.99
723675--723718	17	2.5	17	77	3	52	6	15	4	72	1.22
726362--726411	16	3.3	14	78	15	55	82	4	0	14	0.82
727870--727914	19	2.4	19	81	7	56	24	0	24	51	1.49
759555--759627	35	2.0	37	94	5	132	21	17	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759544--759647	35	2.7	36	85	13	129	21	21	14	43	1.87
767375--767438	30	2.1	31	85	8	87	18	48	18	14	1.81
770303--770348	3	15.7	3	78	13	51	67	0	0	32	0.91
770304--770350	10	4.9	10	78	17	55	68	0	0	31	0.90
770304--770342	19	2.2	17	90	9	60	66	0	0	33	0.92
778612--778677	31	2.1	32	91	2	107	18	50	18	13	1.79
786137--786189	24	2.2	25	86	10	74	56	13	0	30	1.37
806312--806343	15	2.0	17	88	11	50	65	0	0	34	0.93
806365--806398	13	2.6	13	80	0	50	44	5	0	50	1.26
807380--807407	4	7.0	4	100	0	56	75	0	0	25	0.81
810857--810904	24	2.0	24	95	0	87	39	22	25	12	1.89
817601--817738	35	3.9	35	94	0	231	18	18	18	44	1.87
830603--830656	25	2.2	25	83	6	65	66	0	0	33	0.92
830606--830644	19	2.2	17	90	9	60	66	0	0	33	0.92
834544--834599	21	2.9	19	80	17	62	80	0	12	7	0.90
835581--835616	16	2.2	17	90	5	56	5	22	5	66	1.34
838416--838485	21	3.2	22	78	15	67	74	5	1	18	1.09
839156--839225	31	2.2	32	92	2	115	17	50	18	14	1.79
846650--846702	24	2.2	24	90	6	81	60	13	0	26	1.33
850050--850093	22	2.0	22	86	0	61	34	15	20	29	1.94
860731--860811	29	2.8	28	78	10	76	64	3	2	29	1.24
860766--860812	15	3.1	16	80	20	57	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866903--866939	15	2.5	15	90	0	56	8	67	16	8	1.40
876667--876732	32	2.1	31	85	2	87	71	3	16	9	1.25
888993--889054	22	2.7	23	75	5	63	51	4	0	43	1.23
890628--890761	70	1.9	71	92	1	225	20	17	15	46	1.84
890627--890761	35	3.8	35	84	1	180	20	17	15	45	1.85

Tables:   1   2   3

The End!