Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005062.1 Hibiscus syriacus cultivar Beakdansim tig00011366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94022

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3412--3436
2
12.5
2
100
0
50
52
0
0
48
1.00
14128--14180
24
2.2
24
83
6
63
56
3
1
37
1.28
20414--20442
14
2.1
14
100
0
58
41
10
6
41
1.66
22090--22246
20
7.7
20
69
7
100
17
21
22
38
1.93
22156--22249
41
2.3
41
96
0
170
22
20
23
34
1.97
22158--22226
21
3.3
21
63
4
59
26
18
23
31
1.97
22366--22390
6
4.2
6
100
0
50
36
48
16
0
1.46
22872--22907
6
6.0
6
100
0
72
0
16
50
33
1.46
23931--23967
18
2.0
20
89
10
60
27
0
0
72
0.84
60828--60906
31
2.5
31
91
0
122
34
15
13
36
1.87
66007--66069
23
2.7
23
75
12
56
39
1
11
47
1.49
66016--66063
23
2.1
24
84
7
64
39
2
12
45
1.54
69479--69522
2
23.5
2
86
13
67
47
0
0
52
1.00
73600--73666
31
2.1
32
86
2
91
19
19
7
53
1.68
73600--73683
31
2.7
30
81
9
87
17
20
9
52
1.72
75232--75265
17
2.0
17
88
0
50
52
0
0
47
1.00
81061--81126
2
33.0
2
100
0
132
50
0
50
0
1.00
83870--83914
22
2.2
20
85
14
58
37
0
0
62
0.96
85546--85641
47
2.0
48
97
2
185
40
16
6
36
1.74
86693--86814
12
9.9
12
79
5
127
61
0
38
0
0.96
86693--86802
24
4.5
24
86
6
148
60
0
39
0
0.97
86690--86814
36
3.7
35
77
19
149
62
0
37
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86692--86801
5
21.2
5
69
23
59
60
0
39
0
0.97
91189--91229
20
2.0
21
85
4
57
34
7
2
56
1.40
91831--91860
14
2.1
14
93
0
51
60
0
3
36
1.14
93000--93317
155
2.1
155
96
1
586
15
28
22
34
1.94

Tables:   1

The End!