genome.fa.s5088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005088.1 Hibiscus syriacus cultivar Beakdansim tig00011434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201410

Tables:   1   2   

This is table  1  of  2  ( 129 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211--250	5	7.6	5	83	10	53	22	2	0	75	0.93
211--263	22	2.4	22	84	9	63	20	3	0	75	0.96
297--366	22	3.1	22	86	12	81	21	5	0	72	1.05
552--590	20	1.9	21	84	5	53	17	7	0	74	1.05
5811--6674	165	5.2	162	81	6	932	29	25	20	24	1.99
5811--6674	83	10.5	83	79	6	774	29	25	20	24	1.99
5823--6668	247	3.4	243	82	5	1009	30	25	20	24	1.99
8307--8346	8	5.1	8	88	11	57	15	7	0	77	0.98
8305--8346	15	2.7	15	82	17	59	14	7	0	78	0.95
8297--8344	23	2.0	24	96	4	89	16	4	0	79	0.89
8283--8346	31	2.0	32	87	6	94	18	6	0	75	1.01
8306--8354	13	3.9	13	74	17	50	16	8	0	75	1.03
8361--8398	2	19.0	2	100	0	76	50	0	0	50	1.00
8563--8594	15	2.1	16	94	5	57	15	12	0	71	1.14
8602--8691	5	18.6	5	74	11	62	17	5	2	74	1.11
8602--8691	9	9.9	9	73	19	55	17	5	2	74	1.11
9553--9614	28	2.4	25	77	15	72	53	0	1	45	1.10
12291--12374	40	2.1	41	90	2	134	33	20	38	8	1.82
17358--17393	17	2.1	17	100	0	72	36	16	5	41	1.72
20590--20653	28	2.3	28	100	0	128	23	9	42	25	1.84
23471--23550	40	2.0	40	97	0	151	45	23	7	23	1.78
27689--27730	19	2.2	19	86	0	57	50	28	16	4	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27726--27822	19	5.1	19	87	3	133	13	22	19	44	1.86
28551--28601	20	2.5	20	100	0	102	29	19	31	19	1.97
28814--28903	20	4.6	20	92	1	146	32	28	24	14	1.94
28928--28966	20	2.0	20	94	0	69	12	10	30	46	1.75
29049--29085	14	2.6	14	86	0	56	48	21	0	29	1.50
30998--31055	14	3.9	14	77	16	62	10	15	24	50	1.75
30993--31071	32	2.4	33	93	2	133	11	17	22	48	1.79
31056--31110	20	2.8	19	83	8	65	16	23	23	36	1.94
31586--31630	18	2.5	18	88	0	72	13	15	44	26	1.83
32950--33023	20	3.8	20	81	1	69	43	22	17	16	1.88
33255--33298	22	2.0	22	90	0	70	18	13	45	22	1.84
33491--33538	20	2.4	20	92	0	78	27	20	27	25	1.99
33547--33600	20	2.7	20	97	0	99	25	18	24	31	1.97
33466--33603	61	2.3	61	84	0	186	24	17	23	34	1.96
33466--33621	61	2.6	61	81	2	152	23	19	23	33	1.97
33671--33711	21	2.0	21	85	0	55	34	31	17	17	1.93
34995--35060	33	2.1	31	86	8	89	36	24	15	24	1.93
49229--49349	59	2.1	59	81	6	138	37	18	5	38	1.75
50361--50398	2	19.5	2	89	5	60	47	0	2	50	1.15
51657--51703	2	24.0	2	95	4	87	48	0	0	51	1.00
51721--51874	30	5.2	30	74	13	133	38	4	2	54	1.35
51744--51810	25	2.6	25	88	2	89	35	4	1	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54520--54647	60	2.1	60	82	0	148	37	17	14	29	1.90
58267--58559	41	7.1	41	76	6	232	25	18	18	37	1.94
58283--58559	82	3.4	82	80	4	299	25	17	18	38	1.92
61397--61535	31	4.5	31	98	0	262	17	20	22	39	1.92
63582--63741	42	3.8	42	83	6	198	25	21	20	33	1.97
63582--63757	43	4.1	43	83	4	196	24	21	21	32	1.97
64294--64329	9	3.8	10	85	14	58	50	0	0	50	1.00
69719--69753	17	2.1	17	100	0	70	37	22	17	22	1.94
69807--69863	26	2.2	25	78	9	62	38	3	1	56	1.27
75061--75153	20	4.6	20	93	1	141	21	27	20	30	1.98
75061--75173	40	2.8	41	84	2	156	23	29	20	26	1.99
84448--84506	29	2.1	28	84	9	75	49	20	8	22	1.75
85506--85544	20	2.0	20	100	0	78	38	5	15	41	1.69
85558--85597	20	2.0	21	90	5	64	37	5	12	45	1.64
85505--85654	53	2.9	52	94	3	257	33	6	12	48	1.64
85611--85650	20	2.0	20	90	0	62	35	5	12	47	1.63
88902--89012	20	5.9	20	73	16	94	33	6	15	45	1.71
89027--89066	20	2.0	20	90	0	62	35	5	12	47	1.63
88902--89066	73	2.3	72	93	1	285	32	6	13	47	1.68
109259--109295	18	2.1	18	90	5	58	40	8	0	51	1.32
110570--111322	22	28.3	29	67	28	261	35	0	12	52	1.39
110593--111074	54	9.1	54	82	12	490	34	0	12	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110824--110967	75	1.9	78	88	8	224	34	0	13	52	1.40
110860--110972	21	4.8	21	74	21	84	35	0	12	52	1.39
110903--111074	53	3.3	54	91	5	284	36	0	11	52	1.38
111085--111261	54	3.3	54	94	3	313	35	0	11	52	1.38
111298--111367	21	3.2	21	74	20	72	34	0	15	50	1.45
111375--111417	22	2.0	22	90	0	68	37	2	11	48	1.52
111442--111500	31	1.9	31	89	0	91	44	10	5	40	1.60
118516--118550	3	11.7	3	100	0	70	68	0	0	31	0.90
120170--120321	53	2.8	53	81	3	153	25	25	21	28	1.99
120226--120326	53	1.9	53	93	0	175	18	25	24	30	1.98
120767--120992	93	2.4	93	96	0	407	28	20	19	31	1.97
120887--120911	13	1.9	13	100	0	50	24	20	24	32	1.98
120950--121042	42	2.2	42	94	0	159	31	19	23	25	1.98
121162--121262	42	2.4	41	81	3	130	28	23	21	25	1.99
129225--129280	3	18.7	3	100	0	112	67	0	0	32	0.91
131490--131529	21	1.9	21	100	0	80	5	40	5	50	1.46
140569--140729	64	2.5	63	84	8	191	27	22	17	32	1.96
143252--143343	2	46.0	2	100	0	184	50	0	0	50	1.00
143608--143665	2	29.0	2	100	0	116	50	0	0	50	1.00
147984--148036	28	1.9	27	81	11	63	43	0	1	54	1.11
149848--149986	36	3.9	36	91	0	217	31	23	24	20	1.98
154296--154356	30	2.0	30	90	6	97	60	0	8	31	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155204--155240	2	18.5	2	100	0	74	48	0	0	51	1.00
159601--159683	42	2.0	43	80	7	98	31	14	20	33	1.93
159651--159849	41	4.8	40	77	15	174	32	19	22	26	1.97
159699--159971	82	3.3	83	78	11	276	36	17	19	27	1.93
159741--159992	41	6.1	41	74	14	164	36	17	17	28	1.93
159832--160034	41	5.0	40	79	9	180	37	15	15	31	1.89
159875--160034	82	2.0	82	83	1	205	38	14	16	31	1.88
160593--160837	83	3.0	81	83	6	303	27	20	19	33	1.96
160592--160837	41	6.0	41	84	3	296	27	20	19	33	1.96
160808--160902	42	2.3	42	92	1	156	32	12	17	36	1.88
170060--170415	43	8.2	42	77	10	223	34	23	14	28	1.93
170158--170423	90	3.0	90	83	7	312	35	22	12	29	1.91
170057--170371	133	2.4	131	86	4	404	34	22	14	27	1.94
177276--177316	7	5.9	7	97	0	73	46	0	0	53	1.00
177310--177677	181	2.0	180	88	4	551	46	7	3	42	1.49
178012--178085	37	2.0	37	89	0	112	25	8	5	60	1.46
178433--178485	20	2.7	19	74	8	61	33	32	18	15	1.92
178473--178666	20	9.6	20	75	3	138	39	24	18	18	1.92
178473--178666	40	4.8	40	81	5	176	39	24	18	18	1.92
178716--178762	21	2.2	21	84	0	67	19	27	17	36	1.93
178758--178820	20	3.2	20	81	4	83	38	22	17	22	1.93
179684--179737	24	2.2	24	93	0	90	20	18	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182152--182227	33	2.3	34	90	6	120	44	19	21	14	1.86
182238--182322	33	2.5	33	90	1	125	15	23	17	43	1.87
182435--182471	14	2.6	14	86	0	56	48	21	0	29	1.50
183828--183937	42	2.6	42	77	5	107	23	18	36	21	1.95
184427--184465	20	2.0	20	100	0	78	41	20	20	17	1.91
184500--184601	19	5.2	19	80	8	98	11	15	27	45	1.81
184657--185028	94	4.0	94	94	1	629	47	18	12	20	1.81
186684--186791	19	5.8	19	71	16	91	12	18	19	50	1.78
186720--186806	20	4.3	20	82	4	104	12	16	18	52	1.74
187365--187557	20	9.6	20	82	6	246	18	19	26	35	1.95

Tables:   1   2