genome.fa.s5094.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005094.1 Hibiscus syriacus cultivar Beakdansim tig00011457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88018

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271--321	26	2.0	27	88	7	79	74	9	3	11	1.19
5977--6066	42	2.2	42	95	2	164	34	13	15	36	1.87
10580--10614	13	2.6	14	91	8	56	37	0	11	51	1.38
10608--10656	3	16.7	3	91	4	82	65	0	2	32	1.04
11046--11420	196	1.9	198	90	3	596	33	21	15	30	1.94
11211--11659	219	2.1	218	91	2	733	31	20	18	28	1.97
13908--14140	90	2.6	90	91	0	376	34	16	19	29	1.93
17839--17916	23	3.5	22	82	5	95	21	24	29	24	1.99
31319--31395	36	2.1	37	95	2	138	44	14	10	31	1.79
35871--35900	15	2.0	15	100	0	60	13	46	26	13	1.80
36322--36398	36	2.1	37	95	2	138	44	14	10	31	1.79
39719--39801	29	2.8	29	92	1	139	43	9	14	32	1.78
44489--44571	29	2.8	29	92	1	139	43	9	14	32	1.78
47247--47374	30	4.3	29	70	16	82	49	21	4	25	1.68
47247--47373	61	2.1	59	81	9	150	49	20	4	25	1.68
47327--47374	15	3.2	16	75	16	50	50	22	4	22	1.67
49818--49844	14	1.9	14	100	0	54	7	3	7	81	0.97
54336--54397	5	11.6	5	83	10	70	75	0	20	3	0.94
54336--54397	22	2.9	22	88	9	85	75	0	20	3	0.94
54336--54397	27	2.3	26	84	13	81	75	0	20	3	0.94
55423--55875	116	3.9	115	82	6	490	34	16	22	26	1.95
60907--60976	24	2.9	24	78	4	70	34	24	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67832--67934	24	4.3	24	86	2	127	32	25	21	21	1.98
68068--68138	15	4.7	15	85	0	88	38	19	5	36	1.76
73250--73293	22	2.0	22	86	8	63	36	13	0	50	1.42
73266--73316	15	3.4	15	75	0	57	31	19	3	45	1.69
78912--78948	19	1.9	19	88	0	56	35	29	13	21	1.92
78974--79120	20	7.3	19	77	5	123	30	19	20	29	1.97
78974--79120	60	2.4	60	96	1	222	30	19	20	29	1.97
78974--79120	40	3.7	40	80	6	138	30	19	20	29	1.97
79323--79370	22	2.2	22	88	0	69	22	43	12	20	1.86
79769--79815	18	2.4	19	86	10	60	10	14	23	51	1.74
79769--79823	19	2.8	20	83	10	69	12	14	21	50	1.76
81686--81732	20	2.3	20	92	0	76	34	27	21	17	1.95
81806--81846	18	2.3	18	91	0	64	9	12	29	48	1.72
81843--81891	20	2.6	18	81	18	55	14	16	22	46	1.82
81883--81926	20	2.2	20	91	0	70	15	9	22	52	1.71
82396--82439	21	2.2	20	88	11	65	27	29	13	29	1.94
82401--82513	42	2.7	42	74	9	104	23	34	18	23	1.96
83849--83897	14	3.5	14	100	0	98	32	0	20	46	1.51
84036--84095	19	3.1	19	88	4	93	45	23	20	11	1.83
84134--84230	20	4.8	20	90	0	140	27	18	20	32	1.96
86422--86456	14	2.5	14	95	0	61	5	20	22	51	1.68
86640--86693	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86640--86707	24	2.8	24	84	0	64	38	20	17	23	1.93
87507--87566	20	3.3	19	77	13	63	20	21	16	41	1.90

Tables:   1

The End!