genome.fa.s5095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005095.1 Hibiscus syriacus cultivar Beakdansim tig00011458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89905

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9023--9162	60	2.3	60	83	2	174	32	22	4	40	1.74
9300--9416	60	2.0	61	82	3	148	40	6	17	35	1.77
15637--15711	21	3.6	21	94	0	132	21	22	25	30	1.99
16058--16109	24	2.2	24	82	6	61	42	1	1	53	1.23
16364--16493	56	2.3	57	81	2	165	30	13	12	43	1.81
16386--16508	56	2.2	56	82	1	147	29	17	9	43	1.80
16710--16764	27	2.0	28	89	3	85	54	0	3	41	1.18
17597--17639	13	3.2	13	80	3	50	16	4	2	76	1.05
17739--17913	56	3.1	56	87	1	235	40	14	16	28	1.88
17755--17938	56	3.3	55	82	6	217	40	14	15	29	1.87
21172--21202	16	1.9	16	100	0	62	19	35	25	19	1.95
33125--33348	41	5.5	40	73	16	192	31	15	22	29	1.95
33166--33380	40	5.3	41	73	10	181	32	16	21	28	1.96
33125--33365	83	2.9	83	85	6	330	30	15	22	31	1.95
33112--33422	81	3.8	81	86	4	389	29	16	22	30	1.96
33112--33380	41	6.6	39	73	13	186	30	16	22	30	1.96
33272--33405	41	3.3	41	73	14	150	26	17	25	29	1.98
34943--35157	43	5.0	43	78	6	204	31	23	19	26	1.98
40852--40920	31	2.2	31	87	5	95	26	23	13	37	1.91
43779--43879	33	3.1	33	94	0	166	25	16	24	32	1.96
43958--44095	44	3.1	44	95	2	242	36	7	23	31	1.82
43984--44056	25	3.2	25	60	28	61	41	8	20	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43986--44057	24	3.2	24	62	34	59	40	8	20	30	1.82
45477--45553	31	2.5	31	86	0	118	36	14	24	24	1.93
46059--46097	2	19.5	2	83	0	51	0	41	5	53	1.23
46838--46876	3	13.0	3	100	0	78	66	0	0	33	0.92
51432--51504	3	24.3	3	100	0	146	0	34	0	65	0.93
52114--52152	20	2.0	20	84	0	51	35	12	7	43	1.72
52523--52977	181	2.5	182	91	0	723	27	14	13	44	1.83
52848--53422	112	5.1	112	90	1	866	25	14	13	46	1.80
54047--54106	9	7.5	8	75	18	54	78	0	3	18	0.89
54039--54105	32	2.1	33	86	13	95	77	1	2	17	0.97
54032--54090	6	9.7	6	80	9	57	77	1	3	16	0.98
54128--54154	10	2.7	10	100	0	54	81	0	0	18	0.69
54564--54610	2	24.0	2	95	4	87	51	0	0	48	1.00
55839--56368	165	3.2	163	84	5	652	25	19	25	30	1.98
55838--56374	84	6.5	84	76	10	503	25	19	25	29	1.98
56490--57552	106	10.0	106	93	0	1759	22	18	25	33	1.96
58065--58099	18	1.9	18	88	0	52	42	28	8	20	1.81
59154--59202	20	2.5	20	87	9	73	2	10	8	79	1.01
59162--59208	13	3.7	13	80	11	53	2	8	10	78	1.04
59154--59212	20	2.9	19	78	11	64	1	8	8	81	0.95
59157--59235	15	5.4	14	75	18	72	1	11	8	78	1.02
59169--59228	30	2.0	31	87	9	88	0	11	8	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59155--59229	21	3.6	19	70	21	53	1	10	8	80	0.98
62135--62201	9	7.6	8	74	14	53	77	0	2	19	0.89
62120--62191	6	11.7	6	78	10	65	79	1	2	16	0.93
62134--62213	14	5.9	13	76	12	72	77	0	3	18	0.92
62226--62252	10	2.7	10	100	0	54	92	0	0	7	0.38
69772--69859	46	1.9	46	92	0	149	45	12	15	26	1.82
74141--74220	8	8.7	9	77	18	53	45	2	7	45	1.45
74480--74520	16	2.6	16	88	3	57	36	12	19	31	1.89
76207--76237	6	5.2	6	100	0	62	16	51	32	0	1.44
78146--78544	199	2.0	197	88	4	597	20	20	17	42	1.89
84957--84992	11	3.2	11	96	4	63	52	0	2	44	1.15

Tables:   1

The End!