genome.fa.s5146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005146.1 Hibiscus syriacus cultivar Beakdansim tig00011592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148056

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1456--1495	2	20.0	2	100	0	80	50	0	0	50	1.00
4457--4509	20	2.7	20	78	0	61	28	26	20	24	1.99
4534--4575	20	2.1	20	86	0	57	33	21	16	28	1.95
4549--4587	20	2.0	19	85	5	51	46	17	10	25	1.80
4575--4629	20	2.7	21	80	8	60	43	18	10	27	1.83
5326--5370	19	2.4	19	82	14	58	35	17	22	24	1.95
6384--6457	29	2.5	29	93	2	121	37	25	22	13	1.91
6822--6926	50	2.1	50	100	0	210	63	15	7	13	1.50
10652--10694	13	3.3	13	73	0	50	20	41	18	18	1.90
13450--13798	43	8.1	43	90	3	515	18	27	23	30	1.98
15716--15758	18	2.4	18	96	0	77	20	51	18	9	1.74
18520--18924	43	9.4	43	95	0	686	17	28	24	30	1.97
21451--21619	86	2.0	80	84	8	214	22	14	26	37	1.92
21716--21780	20	3.2	20	79	14	62	38	15	16	29	1.90
27058--27109	20	2.6	20	81	0	68	26	9	23	40	1.85
28359--28408	19	2.6	19	77	3	55	36	18	18	28	1.94
46346--46385	17	2.4	17	87	8	55	32	0	5	62	1.17
52272--52558	139	2.1	139	82	0	349	32	29	13	24	1.94
52804--52850	3	16.0	3	86	4	69	34	2	0	63	1.06
55061--55286	54	4.2	54	86	1	292	35	21	16	26	1.95
55061--55286	107	2.1	108	85	0	310	35	21	16	26	1.95
57972--58079	30	3.6	30	83	2	92	18	17	28	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58008--58079	29	2.4	30	88	2	101	16	18	30	34	1.93
60523--60565	21	2.0	23	90	9	72	37	4	11	46	1.61
62178--62249	30	2.4	31	78	4	83	20	16	25	37	1.93
68156--68210	20	2.8	20	91	0	92	34	9	27	29	1.87
68623--68903	54	5.2	54	86	0	384	34	21	18	25	1.96
70425--70466	18	2.3	19	80	16	52	33	0	4	61	1.17
74832--74907	10	7.2	10	74	11	62	77	3	3	14	1.06
74864--74907	5	8.6	5	80	14	54	77	2	2	18	0.98
74831--74907	21	3.7	20	75	14	66	76	3	3	15	1.08
74849--74920	26	2.9	26	82	13	89	75	6	1	16	1.10
75213--75257	2	22.5	2	100	0	90	51	0	0	48	1.00
75480--75535	12	4.4	12	79	18	60	58	1	1	37	1.19
76971--77852	105	8.4	105	95	0	1539	23	18	25	33	1.97
76971--77852	421	2.1	421	94	0	1543	23	18	25	33	1.97
78610--78733	63	1.9	64	85	6	171	11	25	11	52	1.70
88115--88148	10	3.4	10	87	0	50	73	0	5	20	1.04
89133--89208	10	7.2	10	74	11	62	77	3	3	14	1.06
89165--89208	5	8.6	5	80	14	54	77	2	2	18	0.98
89132--89208	21	3.7	20	75	14	66	76	3	3	15	1.08
89150--89221	26	2.9	26	82	13	89	75	6	1	16	1.10
89532--89606	35	2.2	34	81	15	84	70	2	1	25	1.08
89563--89604	22	1.9	22	85	9	59	73	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89744--89796	12	4.4	11	76	19	52	56	1	1	39	1.21
89749--89795	2	26.0	2	76	20	50	55	2	0	42	1.12
90952--90988	19	1.9	19	88	0	56	43	0	5	51	1.24
105087--105124	16	2.4	16	95	0	67	28	18	15	36	1.92
106313--106362	27	2.0	24	81	18	57	70	0	2	28	0.99
106306--106376	16	4.6	16	67	13	58	73	1	1	23	1.00
107617--107858	35	6.8	36	74	20	156	43	8	3	44	1.53
107680--107740	27	2.2	28	94	2	106	40	13	3	42	1.60
107708--107818	35	3.2	34	88	1	159	43	9	1	45	1.48
107644--107820	62	2.7	64	81	13	182	42	10	2	44	1.50
107617--107812	97	2.0	100	82	10	242	43	10	3	43	1.54
114463--114552	44	2.1	43	85	6	119	60	4	17	17	1.53
118627--118689	33	1.9	33	93	0	108	17	17	12	52	1.75
120214--120245	3	10.7	3	93	0	55	3	28	0	68	1.04
132647--132819	91	1.9	91	95	0	310	22	26	21	28	1.99
136420--136445	13	2.0	13	100	0	52	38	0	30	30	1.58
139591--139625	18	2.0	18	88	5	54	37	11	28	22	1.89
140304--140364	21	2.9	21	92	0	95	21	18	27	32	1.96

Tables:   1

The End!