genome.fa.s5152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005152.1 Hibiscus syriacus cultivar Beakdansim tig00011617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92187

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319--364	5	8.8	5	85	4	56	0	21	0	78	0.76
319--364	16	2.9	15	81	9	56	0	21	0	78	0.76
319--366	11	4.5	11	87	7	55	0	22	0	77	0.78
424--480	23	2.4	24	88	8	82	19	26	10	43	1.83
1444--1503	30	2.0	30	90	0	93	55	18	6	20	1.65
3445--3508	6	10.7	6	75	0	65	43	0	21	34	1.53
7663--7697	18	1.9	18	88	0	52	31	11	2	54	1.51
10754--10822	23	3.0	23	82	0	93	20	24	23	31	1.98
14686--14716	16	1.9	16	100	0	62	48	0	12	38	1.42
18240--18375	65	2.1	64	87	4	202	33	17	22	27	1.96
20532--20575	13	3.3	13	77	3	52	43	6	11	38	1.67
21049--21168	21	5.5	21	68	9	71	27	18	22	31	1.97
21065--21168	44	2.3	44	88	1	145	27	18	22	31	1.97
23129--23163	15	2.3	15	95	0	61	5	28	8	57	1.52
24687--24737	23	2.4	20	79	17	66	25	31	15	27	1.96
25792--25831	20	2.0	21	85	5	55	25	17	10	47	1.78
25944--25987	21	2.1	21	83	4	54	34	6	2	56	1.38
27911--28065	65	2.4	64	85	3	204	32	17	21	27	1.96
30683--30799	51	2.3	50	83	4	137	31	7	22	38	1.82
31524--31575	17	2.8	18	80	14	61	59	5	5	28	1.44
37250--37293	16	2.8	16	82	0	61	59	20	9	11	1.59
38385--38417	14	2.4	14	94	0	57	54	27	12	6	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41581--41613	16	2.1	16	100	0	66	42	0	15	42	1.46
46919--46966	23	2.1	23	88	0	69	35	12	18	33	1.89
47438--47510	23	3.2	23	92	0	110	38	21	4	35	1.73
47447--47511	23	2.8	23	95	0	112	35	23	3	38	1.70
47928--48000	23	3.2	23	92	0	119	38	21	5	34	1.77
48418--48490	23	3.2	23	92	0	119	38	21	5	34	1.77
47040--48838	491	3.7	490	97	1	3353	39	10	7	41	1.69
51333--52456	183	6.1	183	93	1	1869	33	16	14	36	1.88
53658--53726	3	23.0	3	75	0	66	23	33	7	36	1.82
53658--53730	12	6.1	12	86	0	83	23	32	8	35	1.84
53662--53743	36	2.3	36	91	0	128	20	32	8	37	1.83
53684--53738	12	4.6	12	90	0	83	18	34	10	36	1.86
53680--53743	6	10.7	6	79	0	65	18	32	9	39	1.83
55207--56381	200	5.9	200	96	1	2117	31	17	14	36	1.90
55207--56381	398	2.9	399	96	1	2108	31	17	14	36	1.90
58318--58383	33	2.0	33	90	0	105	22	48	0	28	1.51
58417--58481	21	3.1	21	93	0	103	16	30	10	41	1.83
60496--60548	24	2.2	24	83	6	63	26	7	13	52	1.66
60692--60747	20	2.9	19	75	15	60	23	14	8	53	1.68
60873--60919	20	2.3	20	89	10	78	17	19	8	55	1.67
60660--61133	184	2.6	179	87	4	639	27	16	13	43	1.85
65056--65191	60	2.3	59	82	3	148	44	7	19	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72368--72524	64	2.5	62	81	10	165	28	17	20	33	1.96
75756--76058	149	2.0	148	91	1	482	36	21	14	27	1.93
77408--77564	64	2.5	62	81	10	165	28	17	20	33	1.96
84351--84474	39	3.2	39	82	2	151	37	12	13	35	1.84
91649--91839	38	5.1	39	81	8	218	38	14	14	31	1.87
91649--91839	73	2.6	74	84	4	242	38	14	14	31	1.87

Tables:   1

The End!