genome.fa.s516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000516.1 Hibiscus syriacus cultivar Beakdansim tig00000983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102194

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8812--8870	30	1.9	31	86	10	86	28	1	11	57	1.44
15602--15695	42	2.3	41	81	1	107	24	19	22	34	1.97
15692--15730	20	2.0	20	100	0	78	25	25	20	28	1.99
15420--15989	278	2.1	277	90	2	894	32	17	17	32	1.93
15877--15995	42	2.9	41	81	6	134	26	21	22	30	1.99
16350--16497	45	3.3	45	85	0	199	23	16	16	43	1.86
16350--16607	45	5.5	45	77	12	180	24	17	16	41	1.90
16479--16725	50	4.9	50	83	6	279	23	21	17	37	1.94
17282--17816	134	4.0	135	84	4	612	30	19	18	31	1.95
17282--17820	267	2.0	262	82	6	649	30	19	18	31	1.95
20069--20134	2	33.0	2	93	0	114	50	3	0	46	1.16
23662--23717	17	3.2	17	79	18	62	78	1	0	19	0.84
23672--23752	15	5.3	15	70	25	55	72	2	1	23	1.03
23679--23745	26	2.5	29	83	11	81	71	2	1	23	1.08
23660--23766	9	12.0	9	71	18	64	72	2	1	22	1.07
23662--23752	27	3.4	27	77	8	82	74	2	1	21	0.99
24179--24229	23	2.2	22	80	10	57	29	9	1	58	1.41
25779--25823	3	14.7	3	90	4	72	35	0	62	2	1.08
28785--29124	124	2.7	125	86	2	461	35	23	14	26	1.93
31402--31466	29	2.2	28	76	12	69	30	13	1	53	1.49
33199--33264	23	2.8	23	81	6	71	43	4	1	50	1.32
33472--33535	23	2.7	25	81	13	73	53	0	4	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36090--36186	42	2.3	42	89	0	140	29	36	17	16	1.92
36304--36344	21	2.0	21	85	0	55	14	12	36	36	1.84
36301--36398	42	2.3	42	71	3	99	18	14	35	31	1.91
36370--36462	42	2.2	43	75	5	100	22	11	31	34	1.90
36573--36618	4	11.5	4	80	0	56	28	2	2	67	1.14
36764--36880	42	2.8	42	90	0	180	22	36	17	23	1.95
36764--36880	21	5.6	21	79	4	128	22	36	17	23	1.95
43337--43365	12	2.4	12	100	0	58	37	0	31	31	1.58
45201--45260	20	2.9	19	83	14	66	21	31	26	20	1.98
45244--45283	21	1.9	21	89	0	62	25	40	25	10	1.86
51506--51534	12	2.4	12	100	0	58	37	0	31	31	1.58
53438--53477	21	1.9	21	89	0	62	25	40	25	10	1.86
59761--59789	12	2.4	12	100	0	58	37	0	31	31	1.58
61656--61717	23	2.9	21	85	7	81	20	35	25	17	1.95
61699--61738	21	1.9	21	89	0	62	25	40	25	10	1.86
66837--66870	12	2.8	12	90	0	50	14	0	29	55	1.40
67466--67504	15	2.5	15	83	4	51	66	0	5	28	1.12
67686--67868	21	9.0	21	79	5	162	26	12	27	32	1.93
67686--67813	21	6.2	21	85	3	170	29	10	26	32	1.90
67686--67868	41	4.5	41	80	6	185	26	12	27	32	1.93
67686--67831	62	2.4	61	81	4	168	28	10	27	32	1.91
67819--67866	19	2.5	19	86	3	60	22	16	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71034--71061	4	7.0	4	100	0	56	50	25	0	25	1.50
76676--76727	21	2.5	21	84	6	61	23	23	26	26	2.00
78392--78418	6	4.5	6	100	0	54	51	0	18	29	1.46
78466--78558	42	2.2	41	92	1	150	31	8	18	41	1.80
78466--78618	42	3.6	40	80	8	144	28	7	17	45	1.76
78604--78638	17	2.1	17	88	0	52	22	11	8	57	1.61
78817--78849	17	1.9	17	93	0	57	48	0	0	51	1.00
79167--79267	29	3.4	29	78	8	105	37	7	8	45	1.65
79199--79267	14	4.7	14	71	16	50	34	8	8	47	1.65
83178--83356	64	2.8	63	82	8	218	29	17	24	28	1.97
83179--83384	64	3.2	64	77	8	190	28	17	23	29	1.97
83702--83732	15	2.1	15	100	0	62	48	12	0	38	1.42
85991--86073	24	3.6	24	68	21	70	25	21	27	25	1.99
91792--91970	64	2.8	63	81	8	200	29	17	24	29	1.97
93009--93056	21	2.4	20	83	10	62	52	2	0	45	1.12
92974--93113	2	73.5	2	80	12	116	50	0	1	47	1.15
94412--94460	10	4.9	10	80	7	55	28	4	2	65	1.22
94506--94557	21	2.5	21	96	0	95	23	3	3	69	1.22
98423--98502	31	2.6	31	90	2	126	61	3	5	30	1.35

Tables:   1

The End!