genome.fa.s5168.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005168.1 Hibiscus syriacus cultivar Beakdansim tig00011662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  818383

Tables:   1   2   3   4   

This is table  4  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703956--704003	22	2.2	22	100	0	96	54	0	14	31	1.41
704943--705092	79	1.9	79	80	9	173	48	4	2	46	1.32
704974--705042	32	2.1	32	89	7	104	47	4	0	47	1.21
704992--705052	18	3.5	17	78	17	72	49	4	0	45	1.23
705055--705115	28	2.3	27	85	5	79	45	6	3	44	1.46
705102--705201	41	2.5	40	81	10	107	49	3	4	44	1.36
705151--705273	2	64.5	2	70	18	75	47	0	5	46	1.32
705406--705448	17	2.4	18	88	3	61	46	6	4	41	1.51
705421--705474	24	2.2	24	83	6	65	40	9	5	44	1.60
705491--705557	21	3.2	21	77	8	73	43	4	4	47	1.43
705471--705515	14	3.3	14	87	3	65	44	8	4	42	1.56
705576--705666	43	2.2	40	86	7	119	43	4	4	47	1.43
705648--705774	31	3.9	31	81	9	112	45	3	1	48	1.30
705726--705830	29	3.8	28	73	18	94	48	1	0	48	1.18
705749--705819	23	3.1	22	73	17	65	47	1	1	49	1.18
705761--705823	6	11.2	6	76	20	57	47	0	1	50	1.10
705728--705828	53	1.9	52	84	9	134	49	1	0	47	1.19
705525--705829	142	2.1	144	77	14	319	45	2	2	48	1.31
706564--706639	25	3.0	25	92	0	125	47	13	10	28	1.76
706568--706637	13	5.5	13	77	13	83	47	12	10	30	1.75
706736--706817	18	4.6	18	80	7	78	43	8	2	45	1.47
706766--706875	18	5.8	19	73	14	93	46	5	3	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706844--706886	18	2.4	17	81	11	50	55	4	2	37	1.33
706847--706942	25	3.9	24	75	10	77	51	3	3	42	1.33
706904--707059	2	81.0	2	67	18	82	48	2	4	44	1.36
706890--707059	66	2.6	64	75	17	163	48	2	4	44	1.37
707255--707328	37	2.1	36	84	5	96	40	9	10	39	1.73
707314--707389	20	4.0	20	77	16	72	46	5	7	40	1.56
707364--707407	2	21.5	2	82	13	54	47	2	2	47	1.27
707364--707407	19	2.4	19	85	11	56	47	2	2	47	1.27
707419--707491	22	3.3	22	66	11	58	49	10	1	38	1.47
707401--707520	45	2.7	45	93	0	204	45	10	2	41	1.51
707433--707505	15	4.8	15	73	8	58	47	6	1	43	1.38
707472--707540	21	3.2	21	73	13	61	49	5	1	43	1.35
707560--707630	34	2.0	34	89	5	106	46	4	1	47	1.30
707529--707630	31	3.0	35	82	9	108	46	3	1	48	1.32
707949--708150	103	2.0	102	79	6	221	34	24	4	35	1.77
708355--708424	6	11.7	6	78	0	68	42	47	4	5	1.47
708416--708453	17	2.2	18	90	4	60	36	47	7	7	1.62
710932--710985	23	2.3	24	96	3	101	48	9	0	42	1.35
711823--711907	25	3.4	25	69	9	82	51	3	1	43	1.26
711830--711915	28	3.2	28	70	21	94	56	4	1	37	1.27
713070--713573	54	9.4	54	85	4	633	35	20	16	27	1.94
713070--713573	269	1.9	269	87	4	748	35	20	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720093--720355	54	4.9	54	87	3	352	35	19	17	27	1.94
723402--723612	105	2.0	105	97	0	395	24	9	16	49	1.74
725843--725881	21	1.9	20	84	5	51	38	17	15	28	1.91
734917--734980	33	1.9	33	93	0	110	40	17	23	18	1.91
752286--752411	47	2.8	45	88	5	182	30	23	7	37	1.84
758014--758038	6	4.2	6	100	0	50	32	36	16	16	1.90
760312--760437	47	2.8	45	86	5	182	30	22	7	38	1.83
760546--760674	59	2.2	59	85	2	170	27	26	17	28	1.97
773435--773467	17	1.9	17	93	0	57	24	12	36	27	1.91
773456--773505	20	2.5	20	81	12	59	26	26	18	30	1.98
777649--777677	2	14.5	2	100	0	58	51	0	0	48	1.00
777696--777749	21	2.8	18	81	15	56	62	3	3	29	1.29
777700--777750	18	2.6	19	79	11	59	62	3	3	29	1.31
778508--778612	37	2.8	37	88	0	156	30	15	14	40	1.87
779340--781215	106	18.0	106	86	4	2574	22	17	24	34	1.96
779340--781212	830	2.2	830	97	0	3514	22	17	24	34	1.96
782021--782095	22	3.4	22	85	7	107	21	10	28	40	1.86
782731--782780	16	3.3	15	78	13	57	2	12	8	78	1.05
783745--784244	55	9.1	55	82	2	545	31	20	19	29	1.97
783745--784244	221	2.3	219	84	3	628	31	20	19	29	1.97
785002--785272	45	6.0	44	76	6	215	42	19	13	24	1.87
807640--807682	15	3.2	13	78	15	52	67	0	9	23	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
807694--807735	2	21.0	2	100	0	84	50	0	0	50	1.00
807817--807910	27	3.4	28	78	11	95	40	8	1	50	1.40
807827--807916	28	3.4	25	83	11	94	37	8	2	51	1.46
814856--814893	18	2.1	19	90	5	60	34	26	15	23	1.95

Tables:   1   2   3   4

The End!