Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000517.1 Hibiscus syriacus cultivar Beakdansim tig00000984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59407

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16542--16648
42
2.6
41
80
2
124
28
21
20
29
1.98
16193--17453
257
5.1
252
82
7
1337
32
15
18
33
1.92
16549--17254
238
3.0
235
85
6
948
32
16
18
33
1.93
17452--17516
26
2.6
24
78
9
76
78
0
9
12
0.96
19112--19148
16
2.2
17
90
4
58
18
0
13
67
1.23
19097--19148
15
3.2
16
86
5
61
17
0
19
63
1.31
22556--22647
29
3.2
29
96
0
166
25
16
25
33
1.96
26435--26499
11
6.1
11
70
22
50
35
26
24
13
1.93
26437--26520
42
2.0
42
100
0
168
33
26
28
11
1.92
26501--26559
28
2.1
28
96
0
109
37
13
38
10
1.79
26558--26657
29
3.4
29
94
2
166
16
30
31
23
1.96
26712--26764
27
2.0
27
100
0
106
30
22
20
26
1.98
26876--26921
23
2.0
23
100
0
92
47
4
39
8
1.54
26876--26936
23
2.6
23
86
5
59
50
4
36
8
1.54
26926--26978
21
2.5
21
96
0
97
62
0
35
1
1.06
26924--26955
17
1.9
16
93
6
55
62
0
37
0
0.95
27113--27201
41
2.2
41
78
8
92
42
1
10
46
1.45
27182--27273
46
2.0
48
87
8
136
41
0
11
46
1.41
27314--27390
34
2.3
33
81
14
88
40
0
12
46
1.42
27436--27482
16
3.0
16
84
9
53
29
0
10
59
1.31
27457--27487
15
2.1
14
94
5
53
38
0
6
54
1.26
29635--29667
17
1.9
17
93
0
57
45
12
6
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29768--29854
38
2.4
37
81
9
99
51
4
2
41
1.35
29784--30135
14
26.1
13
71
19
153
44
9
2
43
1.51
29784--30135
26
14.2
26
72
13
249
44
9
2
43
1.51
29800--30169
124
3.0
124
93
1
629
44
10
2
42
1.51
33003--33061
26
2.3
24
78
16
64
40
3
8
47
1.51
33870--33932
28
2.2
30
91
5
103
57
11
0
31
1.34
33874--33939
28
2.4
28
85
10
98
56
10
0
33
1.34
33909--33957
21
2.3
21
85
3
71
53
16
0
30
1.43
34413--34492
25
3.4
25
64
29
66
21
36
22
20
1.95
34416--34504
45
2.0
45
97
0
169
22
35
21
20
1.96
34591--34654
28
2.2
29
88
2
94
15
28
35
20
1.93
36781--36909
59
2.2
60
80
1
143
34
11
14
38
1.83
48491--48544
29
1.9
29
88
7
85
64
14
3
16
1.42
52492--52532
2
20.0
2
95
5
73
48
2
0
48
1.14
56237--56270
15
2.3
15
89
0
50
2
14
2
79
0.97
57225--57259
15
2.3
15
90
0
52
54
8
17
20
1.68

Tables:   1

The End!