genome.fa.s5195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005195.1 Hibiscus syriacus cultivar Beakdansim tig00011736_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118576

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419--1556	64	2.2	63	79	7	145	34	18	22	24	1.96
1567--1618	20	2.7	20	96	3	97	26	21	23	28	1.99
4626--4668	16	2.7	16	82	10	52	72	4	0	23	1.04
4634--4675	16	2.7	15	82	10	57	71	7	2	19	1.20
6345--6383	20	1.9	21	94	5	71	25	20	15	38	1.92
22075--22115	8	5.2	8	82	5	57	34	0	29	36	1.58
22186--23325	128	8.9	128	95	0	2086	23	25	19	31	1.98
23726--23825	33	3.0	34	82	2	130	39	2	4	55	1.30
24345--24438	21	4.5	21	89	5	120	20	26	34	19	1.96
24442--24489	21	2.3	21	85	0	60	22	12	39	25	1.89
26215--26299	32	2.6	32	81	5	98	60	2	0	37	1.10
26210--26290	35	2.4	34	81	8	103	61	1	0	37	1.04
26243--26322	34	2.3	34	81	12	92	65	5	0	30	1.14
39422--39457	19	1.9	19	88	5	56	16	13	5	63	1.47
40192--40438	83	3.0	83	87	2	356	43	10	5	40	1.62
53060--53128	23	3.0	23	74	4	68	30	26	23	20	1.98
55625--55710	43	2.0	42	95	2	154	26	19	24	29	1.99
59747--59783	18	1.9	18	89	10	56	70	2	0	27	1.01
60618--60645	14	2.0	14	100	0	56	50	7	0	42	1.30
61251--62103	182	4.7	182	89	1	1275	40	14	17	27	1.88
61251--62103	363	2.3	363	87	3	1268	40	14	17	27	1.88
64064--64118	24	2.5	22	81	18	62	49	0	3	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64504--64547	21	2.1	21	95	0	79	40	11	34	13	1.81
64797--64835	18	2.2	18	90	0	60	53	0	38	7	1.30
66374--66422	19	2.6	19	96	0	89	32	2	10	55	1.45
66374--66441	19	3.6	19	88	2	66	33	1	13	51	1.50
66734--66772	15	2.6	15	95	0	69	38	25	12	23	1.90
66789--67148	200	1.8	200	93	0	630	38	13	14	33	1.85
70641--70746	45	2.3	47	86	6	144	30	10	19	39	1.85
79767--79858	18	5.4	18	73	17	72	73	0	16	9	1.08
79768--79823	8	6.6	8	78	10	58	76	0	17	5	0.96
79784--79953	23	7.4	24	67	21	73	74	0	16	9	1.07
79802--79847	24	2.0	24	87	12	69	78	0	13	8	0.97
79777--79954	16	10.3	18	67	24	75	74	0	16	9	1.07
79777--79954	67	2.5	70	77	17	181	74	0	16	9	1.07
81320--81679	55	6.6	55	82	6	353	28	16	23	31	1.96
81320--81685	164	2.2	165	84	5	447	28	16	23	31	1.96
82893--83716	200	4.1	197	82	6	939	36	14	16	32	1.88
82910--83716	398	2.0	397	84	6	1053	37	14	16	32	1.88
85196--85258	3	21.0	3	83	0	81	38	1	30	30	1.67
87951--89115	199	5.8	199	85	3	1380	37	13	15	32	1.87
87958--89115	399	2.9	395	83	3	1441	37	13	15	32	1.87
90724--90772	19	2.6	19	83	0	71	34	4	8	53	1.50
93255--93967	201	3.6	197	79	7	757	38	14	15	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93968--94217	87	2.9	87	96	0	464	32	15	11	40	1.83
94052--94096	23	2.0	23	90	0	72	37	17	8	35	1.81
94139--94183	23	2.0	23	90	0	72	40	17	8	33	1.81
96452--96483	3	10.7	3	100	0	64	31	0	0	68	0.90
96544--96595	26	2.0	26	100	0	104	38	3	19	38	1.70
97656--97842	58	3.2	57	77	12	180	44	14	7	33	1.73
98113--98240	33	3.8	33	81	7	143	33	21	9	35	1.86
98619--98644	11	2.4	11	100	0	52	38	15	0	46	1.46
99101--99166	33	2.0	33	85	5	89	33	24	10	31	1.89
99397--99623	43	5.3	43	83	5	233	28	22	21	27	1.99
99422--99623	87	2.3	86	84	5	246	26	22	21	29	1.99
102370--102709	41	8.2	41	83	4	378	33	18	19	28	1.95
102774--102935	41	3.9	42	79	6	163	33	15	14	35	1.88
102776--102936	82	2.0	81	85	7	218	32	15	14	36	1.89
102848--103136	42	7.0	40	73	15	178	26	19	19	35	1.95
102947--103136	82	2.3	83	88	4	276	23	21	20	34	1.96
106029--106054	2	13.0	2	100	0	52	50	0	0	50	1.00
107510--107575	3	21.3	3	84	6	87	60	0	0	39	0.97
108324--108613	91	3.2	91	75	7	275	24	31	17	26	1.97
108960--108998	11	3.2	12	83	16	53	56	2	0	41	1.13
109266--109302	2	18.5	2	100	0	74	51	0	0	48	1.00
109530--109582	23	2.3	23	96	0	97	26	26	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110436--110529	3	32.7	3	73	16	83	57	0	4	38	1.18
110436--110530	8	11.8	8	87	12	101	56	0	4	38	1.19
110436--110526	14	6.4	14	75	18	73	57	0	4	38	1.19
110912--111145	123	1.9	122	90	2	371	38	20	15	24	1.92
111808--111869	28	2.4	26	85	15	92	45	0	4	50	1.23
111819--111894	36	2.3	35	80	13	88	44	0	5	50	1.24
111777--111863	37	2.3	38	86	4	113	48	1	3	47	1.26
111883--111980	29	3.4	29	80	12	121	45	2	6	45	1.39
111887--111978	27	3.3	27	79	8	87	45	2	6	45	1.41
111945--112135	33	5.5	35	69	20	125	47	1	6	44	1.36
111765--112104	65	5.3	63	76	14	259	46	1	6	46	1.37
111944--112045	39	2.6	39	86	7	143	47	0	6	45	1.36
112013--112068	26	2.2	26	93	0	94	53	0	7	39	1.28
111881--112136	134	1.9	134	82	9	324	47	1	6	44	1.38
112104--112146	23	1.9	22	85	4	59	44	0	4	51	1.22
114975--115014	21	1.9	21	90	10	64	55	5	7	32	1.50

Tables:   1

The End!