genome.fa.s5206.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005206.1 Hibiscus syriacus cultivar Beakdansim tig00011774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227869

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137392--137476	35	2.5	33	78	14	91	25	8	10	55	1.62
140470--140501	15	2.1	15	94	0	55	28	31	6	34	1.82
149605--149693	42	2.1	42	85	0	115	48	4	7	39	1.53
159658--159724	31	2.2	31	94	0	116	17	28	32	20	1.96
160707--160797	47	1.9	47	93	0	155	51	16	12	19	1.75
161243--161282	20	2.0	20	90	0	62	27	20	30	22	1.98
164603--164643	20	2.0	21	85	4	57	21	14	7	56	1.63
165067--165151	36	2.4	36	100	0	170	17	29	2	50	1.59
165953--165988	2	17.5	2	94	5	63	50	2	0	47	1.15
166414--166484	18	3.9	18	84	0	97	25	32	21	21	1.98
169189--169222	16	2.1	17	88	5	52	35	23	0	41	1.55
170605--170683	18	4.4	18	79	6	97	31	31	17	18	1.95
170597--170683	36	2.4	36	86	0	120	29	31	18	20	1.96
173488--173527	20	2.0	20	90	0	62	27	17	27	27	1.98
173918--173969	21	2.5	21	81	3	61	38	19	25	17	1.93
173958--174071	20	5.7	20	83	6	113	31	25	18	24	1.97
173955--174071	61	1.9	61	85	0	162	33	24	17	23	1.97
174634--174668	18	1.9	18	88	0	52	48	22	17	11	1.79
174666--174797	19	7.1	19	77	14	123	12	23	20	43	1.86
176890--177091	42	4.8	42	78	3	185	23	36	17	23	1.95
176887--177061	84	2.1	84	95	1	316	22	37	16	24	1.94
178449--178484	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178647--178773	33	3.9	32	78	8	139	17	19	18	44	1.86
178715--178769	19	3.2	19	68	24	57	14	20	18	47	1.83
178640--178769	66	2.0	66	90	0	206	18	20	17	43	1.88
181065--181089	12	2.1	12	100	0	50	0	28	0	72	0.86
182098--182171	21	3.5	21	100	0	148	36	16	24	22	1.94
182160--182238	20	3.9	20	77	9	70	35	22	18	22	1.96
182112--182247	21	6.6	21	77	5	79	38	19	20	22	1.94
182445--182523	34	2.3	34	100	0	158	34	25	27	12	1.92
182461--182582	20	6.4	20	74	14	123	37	22	24	14	1.92
182515--182602	40	2.4	36	83	11	99	42	20	21	15	1.89
182614--182667	14	3.5	14	77	22	63	11	20	20	48	1.80
182596--182666	33	2.2	33	86	0	97	19	19	19	40	1.91
182794--182830	14	2.6	14	86	0	56	48	21	0	29	1.50
184697--184764	20	3.5	20	81	2	75	38	22	23	16	1.93
184753--184843	14	5.9	14	74	20	83	48	23	17	10	1.79
184737--184848	33	3.4	33	97	1	208	47	22	18	11	1.81
184737--184859	65	1.9	66	91	5	205	47	23	17	11	1.80
184855--184936	18	4.6	19	76	14	95	13	19	20	46	1.83
185225--185271	21	2.2	21	84	0	58	29	29	17	23	1.97
185431--185475	18	2.5	18	88	0	72	13	15	44	26	1.83
186795--186853	20	3.0	20	87	0	73	42	22	18	16	1.89
187116--187159	22	2.0	22	95	0	79	22	15	40	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187327--187481	20	7.7	20	82	6	152	24	18	23	33	1.97
187333--187480	61	2.4	61	82	3	174	24	17	24	33	1.96
187327--187484	81	1.9	82	84	3	212	24	17	23	34	1.96
187327--187502	81	2.2	81	81	5	194	23	19	23	34	1.97
189401--189446	22	2.3	19	85	11	56	63	0	4	32	1.14
190342--190430	2	47.5	2	76	12	91	50	0	0	49	1.00
191087--191148	26	2.4	26	97	0	115	19	17	38	24	1.93
191379--191459	2	41.5	2	92	4	139	50	0	0	49	1.00
191459--191497	18	2.1	19	86	13	55	71	0	7	20	1.10
197192--197246	13	4.2	13	75	13	58	49	12	3	34	1.59
197232--197330	33	3.0	33	94	1	164	45	15	7	32	1.73
197325--197364	21	1.9	21	94	0	71	47	7	15	30	1.72
209071--209175	29	3.6	29	78	14	108	34	12	14	39	1.83
209284--209353	31	2.4	28	77	15	70	42	14	7	35	1.73
211583--211656	31	2.4	31	81	2	76	31	21	8	39	1.83
212295--212353	2	29.5	2	100	0	118	49	0	0	50	1.00
213378--213451	36	2.1	36	94	0	130	36	10	17	35	1.85
214208--214275	31	2.2	31	86	5	93	26	29	11	32	1.92
215242--215487	123	2.0	123	95	0	449	19	17	23	39	1.92
218805--218890	23	3.6	23	92	6	127	43	15	6	34	1.73
218821--218906	27	3.3	27	92	6	135	37	13	11	37	1.82
222100--222147	20	2.4	20	82	10	62	72	0	2	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227230--227297	28	2.4	28	92	5	109	30	26	20	22	1.98

Tables:   1   2

The End!