genome.fa.s5247.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005247.1 Hibiscus syriacus cultivar Beakdansim tig00011870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232795

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204065--204092	14	2.0	14	100	0	56	21	14	21	42	1.88
209258--209335	33	2.4	32	83	12	88	42	0	0	57	0.98
209248--209358	33	3.6	30	75	15	86	40	0	0	58	1.04
210036--210501	127	3.7	127	95	0	833	31	20	25	22	1.98
210542--211077	127	4.2	126	91	2	853	22	23	21	33	1.98
210542--211073	253	2.1	253	92	1	879	22	23	21	33	1.98
211574--211651	25	3.0	25	71	20	63	61	3	0	34	1.14
211603--211649	25	2.0	23	87	8	67	59	4	0	36	1.17
211788--211856	30	2.2	30	82	10	77	56	1	0	42	1.08
216789--217075	32	9.1	32	88	3	383	26	18	20	34	1.96
217414--217444	12	2.6	12	100	0	62	32	0	0	67	0.91
217531--217577	23	2.0	23	91	0	76	25	23	14	36	1.93
221782--221822	18	2.3	18	87	12	66	43	0	0	56	0.99
221708--221811	47	2.2	47	81	6	131	52	0	0	46	1.07
228790--228843	8	6.2	9	81	14	69	50	18	0	31	1.48
229380--229423	11	4.3	11	78	21	51	18	54	11	15	1.70
229391--229431	11	3.5	12	87	12	59	19	51	14	14	1.77
229449--229530	31	2.6	31	80	0	101	52	0	0	47	1.00
229531--229582	24	2.2	24	89	0	77	26	46	13	13	1.80
229531--229582	12	4.3	12	80	0	59	26	46	13	13	1.80
230457--230511	4	14.0	4	80	3	67	41	25	7	25	1.81
230451--230511	8	7.9	8	92	3	90	40	24	8	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230611--230680	14	5.2	13	81	5	59	25	0	24	50	1.50
230616--230666	14	3.7	14	86	2	68	25	0	23	50	1.49
230745--230783	20	2.0	20	94	0	69	43	0	7	48	1.31
231288--231354	19	3.5	20	73	6	57	26	29	0	43	1.55
231485--231523	13	2.7	15	84	15	64	38	5	7	48	1.54
231496--231537	13	3.5	12	90	9	68	38	7	7	47	1.58
231545--231639	29	3.4	28	75	15	99	45	2	3	49	1.29
231567--231612	11	4.5	11	74	20	55	43	0	6	50	1.28
231568--231601	18	1.9	18	94	5	61	47	0	5	47	1.26
231594--231642	19	2.6	18	73	20	55	42	2	2	53	1.24

Tables:   1   2

The End!