Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005263.1 Hibiscus syriacus cultivar Beakdansim tig00011903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75342

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3545--3657
57
2.0
56
83
5
140
38
12
7
41
1.72
3926--3997
24
3.1
24
94
4
121
44
9
6
38
1.64
11162--11214
24
2.3
23
78
18
56
49
1
1
47
1.23
13822--13860
6
6.5
6
100
0
78
0
33
15
51
1.44
14322--14422
3
33.7
3
89
0
157
65
0
0
33
1.00
14713--15615
113
8.0
113
95
0
1324
29
19
13
37
1.90
16341--16714
83
4.5
83
97
0
685
37
20
15
27
1.92
16590--17037
136
3.3
136
99
0
880
37
21
14
26
1.92
16945--17046
52
2.0
52
100
0
204
37
20
15
26
1.93
17878--17946
9
7.3
9
72
23
54
2
18
0
78
0.88
17877--17945
6
11.0
6
76
17
61
2
17
0
79
0.85
17877--17945
19
3.7
18
80
19
79
2
17
0
79
0.85
17876--17945
15
4.9
14
75
16
56
2
18
0
78
0.87
22507--22562
24
2.3
24
100
0
112
30
12
26
30
1.93
24874--24933
30
2.0
30
83
6
77
30
10
31
28
1.89
28587--28628
19
2.2
19
83
8
50
66
2
2
28
1.16
30256--30282
6
4.5
6
100
0
54
0
33
14
51
1.43
30743--30819
3
25.7
3
100
0
154
66
0
0
33
0.92
32660--32890
67
3.5
67
81
7
290
20
8
28
42
1.81
47897--47927
3
10.3
3
92
0
53
35
0
0
64
0.94
52473--52830
190
1.9
190
90
2
576
36
5
10
46
1.63
52731--52848
62
1.9
63
84
5
159
39
5
10
44
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54858--54900
20
2.2
20
100
0
86
46
0
44
9
1.35
60454--60517
23
2.6
25
78
14
78
39
15
17
28
1.90
62613--62643
15
2.1
15
93
0
53
6
16
67
9
1.39
63728--63773
18
2.6
18
82
0
56
41
13
21
23
1.88
65781--65974
2
98.0
2
66
17
66
47
3
4
44
1.39
65781--65864
17
5.2
17
71
17
72
48
2
2
46
1.28
65793--65881
32
2.9
30
82
12
92
47
3
3
46
1.36
65816--65864
18
2.5
20
87
9
75
48
4
0
46
1.20
65847--65977
53
2.5
51
79
12
124
47
3
5
43
1.44
66091--66140
19
2.7
19
84
3
57
48
0
22
30
1.51
66340--68750
4
606.8
4
98
1
4651
25
0
25
49
1.50
68910--68967
14
4.1
14
72
0
53
48
27
0
24
1.51
69423--69480
14
4.1
14
71
8
55
48
27
0
24
1.51
70276--70316
19
2.3
19
87
8
59
53
4
4
36
1.44
70431--70463
13
2.4
14
85
5
50
51
21
0
27
1.48
70453--70493
7
5.9
7
86
11
57
56
26
0
17
1.41
70453--70496
21
2.2
20
91
4
70
56
25
0
18
1.41
70730--70782
2
27.5
2
92
7
92
47
0
0
52
1.00
70787--70843
25
2.3
25
90
0
96
36
1
1
59
1.18
70728--70838
30
3.4
33
80
14
115
41
0
0
56
1.11
71334--71371
16
2.4
16
90
0
58
47
13
26
13
1.79
72113--72147
18
2.0
17
88
5
52
45
0
0
54
0.99

Tables:   1

The End!