genome.fa.s5270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005270.1 Hibiscus syriacus cultivar Beakdansim tig00011915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56091

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885--1931	2	23.0	2	81	12	51	46	2	6	44	1.40
1885--1942	29	2.0	29	96	0	107	44	5	10	39	1.61
2202--2313	41	2.7	43	81	6	131	27	22	17	32	1.97
2730--2790	21	3.0	21	76	9	63	3	39	16	40	1.65
2778--2826	21	2.3	21	79	6	55	6	36	18	38	1.76
11815--12088	81	3.4	81	89	4	383	32	22	16	29	1.95
11815--12111	41	7.3	41	71	14	204	31	22	15	29	1.95
11815--12125	81	3.8	80	86	5	349	31	22	16	29	1.95
14843--14886	23	1.9	23	90	0	70	6	13	40	38	1.71
16823--16878	24	2.3	24	100	0	112	28	17	16	37	1.91
17099--17164	30	2.2	30	86	0	87	10	30	24	34	1.89
17622--17696	39	1.9	39	86	5	107	34	17	0	48	1.48
20742--20787	14	3.4	13	85	8	65	36	21	23	17	1.94
27061--27132	31	2.3	31	87	0	108	29	9	11	50	1.70
27890--27976	25	3.5	25	77	21	78	42	5	0	51	1.25
27941--27993	25	2.3	23	84	15	74	41	0	0	58	0.98
28642--28676	18	1.9	18	88	0	52	51	0	0	48	1.00
28723--28796	38	1.9	38	83	0	94	22	6	35	35	1.81
29055--29110	11	5.1	11	95	0	103	46	8	16	28	1.77
36841--36912	31	2.3	31	87	0	108	29	9	11	50	1.70
37671--37757	25	3.5	25	77	21	78	42	5	0	51	1.25
37722--37774	25	2.3	23	84	15	74	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38422--38456	18	1.9	18	88	0	52	51	0	0	48	1.00
38832--38887	11	5.1	11	95	0	103	46	8	16	28	1.77

Tables:   1

The End!