genome.fa.s5274.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005274.1 Hibiscus syriacus cultivar Beakdansim tig00011922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  315540

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195345--195417	29	2.5	30	86	4	103	16	27	35	20	1.94
196241--196268	12	2.3	12	100	0	56	42	7	0	50	1.30
196407--196554	53	2.8	53	81	5	158	27	10	9	53	1.65
196453--196627	53	3.4	50	80	7	181	26	10	12	49	1.73
199587--199649	27	2.2	29	77	8	76	41	3	1	53	1.26
199686--199710	12	2.1	12	100	0	50	56	0	0	44	0.99
201354--201398	20	2.4	18	82	13	63	51	2	17	28	1.58
201359--201409	20	2.5	20	93	3	84	41	1	23	33	1.66
201498--201564	31	2.2	30	83	2	89	40	8	8	41	1.68
201506--201563	30	1.9	31	89	3	91	41	8	8	41	1.66
220043--220113	20	3.5	20	80	3	81	43	26	9	19	1.82
220260--220313	22	2.5	22	87	0	81	24	40	14	20	1.90
222244--222293	21	2.4	21	82	0	64	20	14	32	34	1.92
222244--222339	42	2.3	41	77	8	104	21	13	33	31	1.92
222311--222354	21	2.1	21	87	8	63	20	6	34	38	1.79
222472--222543	21	3.4	21	77	7	74	23	34	18	23	1.96
222463--222543	42	1.9	42	92	0	135	22	35	17	24	1.95
226631--226698	24	2.8	24	86	0	91	38	19	17	25	1.93
227632--227765	20	6.7	20	70	18	100	35	11	22	31	1.89
227633--227765	40	3.3	40	81	3	160	35	11	22	30	1.89
229480--229506	2	13.5	2	100	0	54	48	0	0	51	1.00
229771--229824	25	2.2	24	87	12	74	14	11	3	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229771--229822	27	2.0	25	89	10	79	13	11	3	71	1.28
233894--234137	95	2.7	94	79	10	260	31	16	18	33	1.94
234263--234356	47	2.0	47	100	0	188	31	19	19	29	1.96
236668--236712	21	2.1	21	87	0	63	31	28	24	15	1.96
237387--237540	31	5.0	31	96	1	274	19	19	22	38	1.94
241217--241261	21	2.1	21	87	0	63	31	28	24	15	1.96
241287--241331	22	2.0	22	82	4	54	31	31	26	11	1.91
241936--242058	31	4.0	31	95	2	212	19	19	22	38	1.94
245070--245127	18	3.3	18	75	4	55	13	1	6	77	1.05
245103--245155	27	1.9	28	85	11	74	13	5	5	75	1.16
247181--247244	31	2.1	31	100	0	128	31	20	9	39	1.84
254361--254414	26	2.1	26	86	6	74	44	3	14	37	1.63
255237--255293	25	2.2	25	76	11	62	40	8	0	50	1.33
255244--255297	27	2.1	26	86	6	74	40	7	0	51	1.30
255310--255398	28	3.1	28	77	6	97	40	7	1	50	1.39
255282--255398	29	4.0	29	81	5	112	39	8	1	50	1.43
255473--255514	19	2.2	20	95	4	77	50	0	4	45	1.23
255539--255642	30	3.5	31	82	5	124	50	0	8	40	1.33
256630--256700	20	3.5	21	81	12	85	29	14	25	30	1.94
256933--256972	20	2.0	20	90	0	62	35	20	20	25	1.96
257935--258072	29	4.7	28	76	7	123	49	1	7	42	1.39
259072--259098	13	2.1	13	100	0	54	48	14	0	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268324--268363	2	20.0	2	94	0	71	47	0	2	50	1.14
268739--268764	10	2.6	10	100	0	52	73	0	7	19	1.07
275521--275556	19	1.9	19	88	5	56	2	11	8	77	1.08
276058--276158	3	33.7	3	88	4	150	62	0	2	34	1.11
276040--276159	15	8.4	14	79	16	115	60	0	2	36	1.10
276406--277064	113	5.8	112	90	3	912	28	20	13	37	1.91
276406--277034	341	1.8	339	88	4	962	28	20	13	37	1.90
277746--277842	50	1.9	50	91	4	160	40	21	14	23	1.90
277625--278123	133	3.7	134	92	1	808	36	21	13	28	1.91
277890--278296	183	2.2	183	99	0	805	36	21	14	27	1.92
278023--278163	50	2.8	50	100	0	282	39	21	14	24	1.91
279058--279102	18	2.6	17	89	6	65	55	6	6	31	1.52
279433--279489	1	57.0	1	75	0	51	0	12	0	87	0.54
279433--279494	7	9.1	7	83	11	76	0	14	0	85	0.60
279433--279489	14	4.2	13	88	6	87	0	12	0	87	0.54
279432--279489	27	2.2	26	90	9	91	0	13	0	86	0.58
279435--279491	5	12.2	5	80	17	61	0	14	0	85	0.59
291754--291789	19	1.9	19	88	5	56	2	11	8	77	1.08
292292--292401	3	36.7	3	88	0	166	61	0	2	35	1.10
293402--293437	18	2.0	18	100	0	72	33	16	16	33	1.92
294582--294736	30	5.1	30	91	1	204	32	25	21	21	1.98
294666--294761	31	3.1	31	83	5	88	34	21	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295751--295795	21	2.1	21	87	0	63	15	24	28	31	1.96
299086--299215	30	4.3	30	94	1	208	30	25	22	21	1.99
299140--299265	31	4.1	31	87	3	103	33	23	21	22	1.97
299759--299809	2	25.5	2	100	0	102	49	0	0	50	1.00
300283--300327	21	2.1	21	87	0	63	15	24	28	31	1.96
305796--305878	26	3.2	26	66	27	75	39	20	2	37	1.66
305776--305881	53	2.0	53	98	0	203	39	21	1	36	1.65
305781--305861	24	3.2	24	64	21	56	39	20	2	37	1.66
308680--308779	35	2.9	35	73	14	91	42	0	0	58	0.98
308688--308761	33	2.2	33	81	11	89	41	0	0	58	0.98
311876--311944	23	3.0	23	78	0	75	30	23	21	24	1.99
312546--312594	20	2.5	20	100	0	98	30	28	16	24	1.96
312645--312763	64	1.9	64	85	3	170	24	17	21	36	1.95
313472--313528	29	2.0	30	82	6	73	35	12	5	47	1.64

Tables:   1   2

The End!