Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005279.1 Hibiscus syriacus cultivar Beakdansim tig00011938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66993

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2960--3010
19
2.6
20
87
3
77
66
0
31
1
1.03
2944--3019
19
4.2
18
75
13
75
68
0
30
1
0.98
4355--4379
13
1.9
13
100
0
50
48
0
4
48
1.20
6966--7003
3
12.3
3
94
5
67
68
0
0
31
0.90
6969--7019
22
2.2
25
89
10
81
64
1
0
33
1.05
7037--7176
71
2.0
71
88
2
210
43
7
5
44
1.53
7150--7186
11
3.3
11
92
7
65
43
8
8
40
1.64
7150--7188
12
3.3
12
96
3
71
43
7
7
41
1.62
7172--7308
73
1.9
72
82
10
172
46
4
3
45
1.40
7080--7253
85
2.1
83
87
6
246
43
5
5
46
1.48
7990--8605
84
7.4
84
79
6
666
24
21
25
29
1.99
7974--8557
249
2.3
245
84
3
729
24
21
25
29
1.99
7990--8605
165
3.7
165
89
2
923
24
21
25
29
1.99
9780--9978
95
2.1
95
88
2
301
31
18
18
32
1.94
14839--14870
3
10.3
3
93
6
55
68
0
0
31
0.90
14902--15041
71
2.0
71
87
2
201
43
7
5
43
1.55
14880--15040
37
4.4
36
73
15
134
45
8
4
40
1.55
15015--15051
11
3.3
11
92
7
65
43
8
8
40
1.64
15015--15053
12
3.3
12
96
3
71
43
7
7
41
1.62
15052--15141
41
2.2
42
82
7
105
43
3
3
50
1.35
14945--15119
85
2.1
82
85
5
226
42
5
5
46
1.49
15814--15869
21
2.8
20
75
8
51
57
3
0
39
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16195--16275
20
4.2
20
82
7
96
1
32
0
66
0.99
16200--16259
32
1.9
32
83
12
81
1
30
0
68
0.99
16213--16267
27
2.0
27
83
13
69
1
32
0
65
1.03
29840--29897
29
2.0
29
90
6
91
34
27
8
29
1.87
30028--30113
35
2.5
35
84
0
100
40
20
1
37
1.61
30082--30124
21
2.0
21
100
0
86
46
13
0
39
1.44
30735--30981
130
1.9
129
93
0
422
36
13
14
35
1.85
33342--33384
22
2.0
21
82
13
52
46
2
23
27
1.64
36678--36761
24
3.7
23
66
13
66
26
23
28
21
1.99
39882--39935
18
3.0
18
91
0
90
18
48
18
14
1.82
39914--39955
13
3.3
13
93
6
77
16
45
23
14
1.84
47111--47160
18
2.8
18
93
0
91
18
48
16
18
1.82
47143--47184
13
3.3
13
80
6
59
19
45
19
16
1.86
47199--47324
29
4.3
29
74
7
103
28
7
23
40
1.82
51919--51984
26
2.5
26
97
0
123
30
22
22
24
1.99
53440--53490
20
2.6
21
79
17
56
37
0
21
41
1.54
59863--59907
3
14.7
3
95
4
81
31
0
0
68
0.89
60967--61030
13
4.8
13
77
12
60
62
0
20
17
1.33
61547--61598
19
2.6
20
90
6
79
44
5
13
36
1.68

Tables:   1

The End!