genome.fa.s5287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005287.1 Hibiscus syriacus cultivar Beakdansim tig00011962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114812

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16770--16807	19	2.0	19	94	0	67	26	28	15	28	1.96
18531--20299	4	445.8	4	98	1	3440	25	0	24	49	1.50
21489--21570	14	5.7	13	70	24	58	3	12	7	76	1.11
21489--21571	13	6.8	12	70	22	59	3	12	8	75	1.14
21503--21567	32	2.0	34	90	6	107	3	13	7	75	1.14
32189--32241	28	1.9	27	84	3	70	3	20	3	71	1.17
32708--32750	3	14.7	3	85	4	61	62	2	2	32	1.20
32710--32753	23	1.9	23	100	0	88	63	2	2	31	1.19
36056--36173	61	1.9	61	83	6	150	35	12	19	32	1.89
39065--39095	13	2.4	13	94	0	53	29	3	12	54	1.53
39560--39593	16	2.1	16	94	5	59	41	0	0	58	0.98
41241--41290	21	2.4	20	80	9	64	26	28	12	34	1.92
41281--41452	60	2.8	61	83	8	192	42	25	13	18	1.87
41440--41492	19	2.7	19	88	5	79	37	22	9	30	1.86
41321--41498	20	8.9	20	80	9	145	41	24	13	21	1.89
41627--41670	22	2.0	22	82	8	54	25	38	6	29	1.81
41668--41705	16	2.5	15	84	12	51	34	0	0	65	0.93
42299--42332	12	2.8	12	90	0	50	55	29	0	14	1.40
42442--42511	24	2.9	24	78	0	77	27	17	18	37	1.93
44780--44815	18	2.0	18	94	0	63	55	25	2	16	1.55
45098--45155	20	2.9	20	87	7	82	20	17	20	41	1.90
46713--46835	42	2.9	42	83	4	133	26	21	34	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46737--46831	21	4.5	21	80	6	95	27	20	32	20	1.97
46975--47016	4	10.5	4	89	0	66	71	2	0	26	0.98
47113--47183	21	3.4	21	88	0	97	30	25	19	23	1.98
47220--47328	42	2.6	42	86	5	150	27	30	17	24	1.97
49036--49089	20	2.7	19	80	8	63	46	20	16	16	1.84
49404--49454	22	2.3	22	89	0	75	21	13	43	21	1.87
49670--49923	80	3.2	79	75	14	277	22	16	21	39	1.92
49592--49846	60	4.2	60	75	15	213	21	15	22	40	1.91
49592--49847	20	12.8	20	81	7	186	21	15	22	40	1.90
49852--49910	20	3.0	20	92	0	91	27	18	16	37	1.93
49731--49878	60	2.5	60	75	10	140	23	16	20	39	1.92
51306--51407	31	3.2	30	69	20	80	40	24	15	19	1.91
51282--51407	66	1.9	67	88	1	191	38	22	18	21	1.94
53056--53099	13	3.2	13	76	17	52	40	22	20	15	1.90
63385--63441	16	3.6	16	90	0	96	59	19	12	8	1.58
64545--64600	14	4.3	14	82	17	84	51	26	14	7	1.67
64542--64599	24	2.4	24	97	0	107	53	25	12	8	1.66
65743--65780	20	1.9	20	84	10	51	47	0	2	50	1.15
68864--69057	99	2.0	96	94	5	345	25	22	5	46	1.72
69203--69334	70	1.9	69	98	1	255	31	25	18	24	1.98
71955--72194	95	2.7	94	82	12	265	30	19	17	32	1.95
73412--73539	36	3.7	34	69	9	98	29	14	10	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73433--73579	68	2.1	68	82	8	168	30	17	10	41	1.83
73585--73659	37	2.0	37	89	0	114	30	18	12	38	1.87
73587--73965	102	3.8	102	89	5	612	31	18	12	37	1.88
73689--73761	37	2.0	37	88	0	110	26	20	12	41	1.87
73885--74042	37	4.0	37	68	20	104	29	18	12	39	1.87
73600--74273	196	3.5	196	87	7	1013	32	17	12	37	1.87
73959--74296	94	3.5	94	90	6	532	33	17	12	36	1.87
74152--74238	37	2.4	36	84	7	122	26	17	13	42	1.86
74077--74273	102	1.9	102	95	0	358	31	17	12	37	1.88
73587--74296	281	2.4	284	89	6	1075	32	18	12	37	1.88
74338--74433	40	2.6	35	73	12	84	33	17	10	38	1.84
75951--75975	2	12.5	2	100	0	50	52	0	0	48	1.00
76262--76298	18	2.1	17	90	5	56	16	5	2	75	1.10
76473--76531	9	6.4	9	79	14	68	13	10	1	74	1.14
76465--76533	23	3.0	22	74	14	68	13	10	1	75	1.11
76506--76541	18	2.0	18	88	0	54	16	13	0	69	1.19
77410--77461	21	2.5	21	81	3	61	38	19	25	17	1.93
77450--77557	20	5.3	20	82	6	110	32	25	17	25	1.97
77512--77564	20	2.7	20	90	0	79	24	26	20	28	1.99
78141--78266	19	7.1	19	72	18	110	11	23	19	44	1.84
78163--78218	14	3.6	14	74	21	58	8	25	23	42	1.82
78146--78241	33	2.9	33	96	0	174	10	23	21	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80358--80560	42	4.8	42	79	2	194	22	36	17	22	1.94
80494--80560	21	3.2	21	66	6	55	23	35	20	19	1.95
80355--80530	84	2.1	84	98	0	343	21	38	17	23	1.93
80355--80560	84	2.5	84	92	1	306	22	36	17	22	1.95
81918--81953	14	2.6	14	95	0	63	30	0	25	44	1.54
82078--82134	14	3.7	14	72	20	51	43	21	24	10	1.83
82060--82149	33	2.7	33	92	0	144	43	20	22	14	1.87
82060--82120	19	3.5	19	74	21	69	44	21	22	11	1.84
82149--82275	33	3.9	32	81	8	166	15	22	19	41	1.89
82142--82274	66	2.0	66	92	0	221	17	22	19	40	1.91
84565--84589	12	2.1	12	100	0	50	0	28	0	72	0.86
84763--84816	24	2.2	24	90	0	81	40	20	16	22	1.91
85804--85874	20	3.5	20	94	0	124	33	26	23	15	1.95
85912--85964	19	2.8	19	91	0	79	15	16	15	52	1.74
86091--86127	14	2.6	14	86	0	56	48	21	0	29	1.50
86328--86356	14	2.0	15	93	6	51	58	13	20	6	1.58
87975--88096	20	6.6	19	73	15	76	42	23	19	13	1.87
88108--88165	14	3.9	14	79	16	71	10	17	24	48	1.78
88092--88181	32	2.8	33	94	3	164	12	18	22	46	1.82
88168--88220	20	2.7	20	87	0	70	13	20	24	41	1.88
90064--90101	20	1.9	20	88	0	58	50	21	15	13	1.78
90383--90426	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90594--90728	20	6.7	20	78	7	112	24	17	24	34	1.96
90594--90731	61	2.3	61	84	0	186	23	16	23	35	1.95
90594--90749	61	2.6	61	81	2	152	23	18	23	34	1.96
90799--90839	21	2.0	21	85	0	55	34	31	17	17	1.93
91604--91665	8	7.9	8	83	3	54	43	0	1	54	1.09
91610--91663	2	27.5	2	84	3	74	44	0	1	53	1.11
92513--92559	23	1.9	23	83	12	58	59	0	2	38	1.09
92532--92565	18	1.9	17	88	5	50	61	0	2	35	1.11
95453--95499	24	2.0	24	100	0	94	61	4	12	21	1.48
95922--96101	81	2.2	82	78	8	190	31	18	18	32	1.95
99720--99925	86	2.4	86	81	4	238	28	19	18	33	1.95
99720--99931	43	4.9	43	78	4	214	28	20	17	33	1.96
102463--102534	37	1.9	37	94	0	126	30	6	16	45	1.74
102996--103035	21	1.9	21	84	0	53	55	0	0	45	0.99
109834--109860	2	13.5	2	100	0	54	48	0	0	51	1.00
110810--110873	28	2.3	28	86	0	92	35	35	7	20	1.82
112122--112225	55	1.9	54	86	3	147	33	8	17	40	1.80
113098--113618	91	5.7	91	84	3	656	38	15	21	24	1.92
113095--113618	182	2.9	182	85	2	725	38	15	21	25	1.92

Tables:   1

The End!