genome.fa.s5313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005313.1 Hibiscus syriacus cultivar Beakdansim tig00012028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182071

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2983--3092	46	2.4	47	82	10	138	31	16	21	30	1.95
4874--4940	29	2.2	32	86	10	95	23	1	2	71	1.08
4870--4935	28	2.3	30	82	7	84	24	1	3	71	1.09
4941--4976	2	18.5	2	94	5	65	50	0	0	50	1.00
5034--5099	31	2.1	32	83	8	82	46	4	1	46	1.32
5120--5175	28	2.0	28	92	0	94	55	0	3	41	1.17
5330--5397	29	2.3	29	89	2	100	26	2	4	66	1.25
5561--5653	28	3.2	29	86	9	118	55	0	5	38	1.23
4722--5636	454	2.0	458	96	2	1682	41	6	5	46	1.53
5561--5653	29	3.2	29	83	11	118	55	0	5	38	1.23
5621--5702	36	2.2	37	82	2	103	48	0	8	42	1.33
5593--5703	36	3.3	35	75	12	90	51	0	7	41	1.29
7739--7791	19	2.7	19	88	11	81	30	22	20	26	1.98
7811--7852	21	2.0	21	90	0	66	26	26	23	23	2.00
8391--8451	22	2.8	22	87	5	79	22	26	19	31	1.98
9897--9972	29	2.6	30	89	2	118	65	5	2	26	1.27
18380--18444	34	1.9	34	84	12	89	18	6	3	72	1.19
18726--18756	2	15.5	2	100	0	62	48	0	0	51	1.00
31271--31322	22	2.3	23	80	6	61	28	19	15	36	1.92
46365--46394	16	1.9	15	93	6	51	0	33	0	66	0.92
50505--50554	2	24.5	2	91	4	82	50	0	2	48	1.12
50781--50835	13	4.2	13	85	0	74	38	18	18	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51472--51524	23	2.3	23	96	0	97	13	26	24	35	1.92
58484--58544	23	2.7	23	81	0	77	16	21	21	40	1.91
60493--60552	22	2.8	21	80	12	68	78	3	15	3	1.01
60484--60544	6	10.3	6	80	8	56	77	3	16	3	1.04
60471--60565	29	3.4	27	72	21	70	77	3	15	3	1.02
61684--61801	47	2.6	46	85	5	143	24	25	18	31	1.98
65688--65740	21	2.5	21	78	6	63	20	24	18	35	1.95
65730--65781	21	2.5	21	81	3	61	40	17	21	21	1.91
65791--65863	21	3.5	21	79	3	85	21	23	17	36	1.94
65715--65967	41	6.2	41	70	11	135	32	19	18	28	1.96
65853--65944	20	4.6	20	77	6	87	39	17	21	21	1.93
66490--66544	19	2.8	20	86	2	85	43	21	21	12	1.86
66570--66681	19	6.1	19	73	14	101	13	23	18	44	1.85
68482--68514	17	1.9	17	88	11	50	24	15	15	45	1.84
68368--68672	94	3.3	94	91	2	476	22	12	18	46	1.82
69117--69183	21	3.2	21	64	6	55	25	35	19	19	1.95
69065--69183	42	2.8	42	82	5	116	24	36	16	22	1.94
70531--70566	14	2.6	14	95	0	63	33	0	22	44	1.53
70673--70785	14	6.8	17	68	26	73	46	22	22	8	1.78
70673--70785	33	3.4	33	93	0	190	46	22	22	8	1.78
70795--70921	33	3.8	33	95	0	218	12	23	18	45	1.83
70830--70941	19	6.4	19	70	20	91	14	23	18	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70816--70903	14	5.6	14	70	23	59	11	25	19	44	1.84
70894--70987	20	4.7	20	70	13	59	22	20	22	35	1.96
73249--73273	12	2.1	12	100	0	50	0	28	0	72	0.86
74341--74437	21	4.7	21	70	12	74	20	18	20	40	1.92
74246--74387	20	7.1	20	89	4	187	23	19	28	27	1.99
74282--74398	41	2.9	41	87	3	130	23	18	26	31	1.97
74246--74416	40	4.2	41	84	3	114	24	19	26	29	1.99
74343--74479	62	2.2	61	92	1	220	21	18	20	40	1.92
74446--74496	20	2.5	20	84	6	68	21	19	17	41	1.91
74486--74538	21	2.5	22	81	6	74	35	16	26	20	1.94
81935--81984	22	2.3	22	85	0	73	48	10	26	16	1.77
83051--83205	44	3.4	43	76	16	143	66	0	8	24	1.24
83063--83195	51	2.7	50	78	13	136	65	0	8	25	1.25
84337--84387	17	2.9	18	82	11	61	74	0	7	17	1.05
84421--84457	14	2.6	14	86	4	56	45	5	2	45	1.40
84476--84664	39	4.9	39	85	3	233	42	7	4	45	1.53
84476--84664	79	2.5	76	84	6	249	42	7	4	45	1.53
84630--84682	25	2.1	25	100	0	106	37	11	5	45	1.64
88990--89014	9	2.8	9	100	0	50	72	0	12	16	1.13
89001--89062	24	2.7	24	76	14	60	72	0	16	11	1.12
88992--89076	30	2.8	29	79	12	91	71	0	15	12	1.14
90365--90459	33	2.8	32	78	10	93	44	11	2	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90365--90516	36	4.5	32	71	18	96	43	9	3	44	1.52
90399--90679	36	7.9	34	72	18	182	41	7	4	46	1.52
90473--90679	112	1.9	108	82	7	256	40	5	4	49	1.48
91256--92195	84	11.4	83	79	6	878	25	20	23	30	1.98
91256--92147	165	5.4	164	87	2	1150	25	20	24	30	1.98
93330--93550	95	2.5	86	79	15	261	31	19	19	29	1.96
93380--93569	95	2.0	95	90	2	301	31	20	16	31	1.95
96113--96187	23	3.3	23	79	3	73	24	18	24	33	1.97
99738--99780	21	2.0	21	86	0	59	30	27	25	16	1.97
101090--101148	30	2.0	29	83	3	73	35	11	22	30	1.90
101378--101463	23	3.7	23	88	0	127	22	27	25	24	1.99
105700--105777	20	3.7	21	81	10	97	16	28	34	20	1.94
109993--110039	19	2.4	20	89	3	69	29	12	4	53	1.58
111313--111417	21	5.1	20	87	3	138	13	26	40	20	1.89
111313--111413	41	2.4	42	90	4	152	13	26	39	19	1.90
113933--114125	36	5.2	36	79	13	189	41	5	4	47	1.48
113847--114114	36	7.5	35	73	14	167	41	6	5	46	1.53
116913--116963	17	2.9	17	73	26	52	45	1	0	52	1.12
120282--120321	21	1.9	21	94	0	71	20	12	15	52	1.74
122492--122541	21	2.4	21	79	0	64	40	16	20	24	1.91
127965--128141	90	2.0	89	90	1	282	38	11	5	44	1.64
131570--131613	17	2.6	17	85	0	52	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135175--135207	3	11.0	3	87	12	50	33	0	0	66	0.92
135180--135209	15	2.0	15	100	0	60	33	0	0	66	0.92
136705--136744	15	2.7	14	88	7	53	40	2	0	57	1.12
136707--136744	12	3.1	13	85	11	53	39	2	0	57	1.12
138985--139021	12	2.7	14	80	19	51	13	21	13	51	1.75
140304--140406	26	3.7	27	71	19	72	70	7	17	3	1.26
141286--141388	26	3.7	27	71	19	72	70	7	17	3	1.26
139962--144849	982	5.0	983	97	1	9228	39	17	17	25	1.91
142268--142370	26	3.7	27	71	19	72	70	7	17	3	1.26
142550--144850	981	2.3	981	97	0	4326	38	17	17	26	1.92
144205--144297	26	3.4	26	73	17	91	72	7	15	5	1.26
145555--145597	20	2.2	20	86	0	59	30	13	20	34	1.92
150510--150552	20	2.2	20	86	0	59	30	13	20	34	1.92
152684--153102	107	4.0	103	84	8	481	32	15	10	41	1.82
153106--153179	36	2.1	36	87	2	105	32	17	10	39	1.84
153341--153574	64	3.6	66	81	8	264	33	11	13	41	1.81
153528--153679	63	2.5	57	82	10	171	28	13	13	44	1.82
153528--153679	29	5.1	29	80	12	148	28	13	13	44	1.82
153721--153778	30	2.0	30	89	3	91	29	13	12	44	1.80
153528--153781	29	8.6	29	69	20	143	29	13	12	43	1.81
153762--153806	22	2.1	21	84	8	56	22	13	13	51	1.75
153633--153857	91	2.5	86	81	14	260	28	12	14	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154074--154313	40	5.5	41	72	17	139	23	32	19	24	1.97
154063--154423	134	2.7	134	89	3	539	24	31	19	24	1.98
158302--158374	35	2.1	35	94	0	128	27	9	17	45	1.80
161368--161405	14	2.5	15	83	8	51	65	10	0	23	1.23
164412--164461	24	2.1	24	82	14	59	50	6	2	42	1.38
167375--167441	25	2.7	24	80	11	64	73	4	7	14	1.22
167455--167515	19	3.2	19	80	2	59	77	4	3	14	1.07
167600--167626	2	13.5	2	100	0	54	51	0	0	48	1.00
167662--167715	21	2.3	24	84	12	69	70	1	1	25	1.07
167663--167697	4	8.2	4	90	9	52	74	2	0	22	0.95

Tables:   1   2