Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005333.1 Hibiscus syriacus cultivar Beakdansim tig00012077_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66248

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8299--8343
20
2.2
20
88
7
65
28
20
11
40
1.86
12771--12804
15
2.2
16
89
5
52
79
0
14
5
0.91
14203--14239
17
2.1
19
90
10
60
37
2
10
48
1.52
17051--17289
83
2.9
83
98
0
451
33
20
20
25
1.97
19397--19422
10
2.6
10
100
0
52
92
0
7
0
0.39
23023--23074
20
2.5
21
90
3
79
46
17
17
19
1.85
23539--23709
47
3.8
45
90
4
238
31
21
7
39
1.81
33283--33328
19
2.4
19
96
0
83
19
17
34
28
1.94
33407--33515
46
2.4
45
87
4
157
40
6
21
32
1.78
33665--33721
30
1.9
30
100
0
114
26
19
24
29
1.98
33805--33843
10
3.9
10
93
0
60
23
25
7
43
1.80
38387--38439
21
2.5
21
84
0
70
20
26
18
33
1.96
38414--38663
41
6.1
41
78
3
193
32
19
20
28
1.97
38429--38665
20
11.6
21
79
5
200
33
19
20
27
1.96
38404--38569
61
2.7
61
75
2
172
31
19
19
29
1.96
38367--38686
143
2.2
143
82
5
412
30
20
19
29
1.97
39209--39279
19
3.7
19
94
1
115
47
22
19
9
1.78
39275--39387
20
6.1
19
77
13
119
11
23
19
46
1.82
39280--39387
33
2.9
39
84
9
120
11
22
19
47
1.80
41127--41609
94
5.1
94
95
1
862
20
12
19
48
1.80
41707--41764
19
3.0
19
90
5
98
50
17
22
10
1.76
41789--41915
19
6.8
19
75
12
120
12
19
19
48
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41792--41917
39
3.4
38
81
10
136
14
19
19
47
1.82
43785--43820
14
2.6
14
95
0
63
33
0
22
44
1.53
43865--43942
19
4.3
19
75
17
76
14
23
20
42
1.88
43895--43949
20
2.8
19
83
2
65
18
21
21
38
1.94
46459--46526
24
2.8
24
86
0
91
36
20
19
23
1.95
47366--47635
20
13.4
20
81
4
226
31
18
19
30
1.96
47385--47662
41
6.8
41
81
5
219
32
17
20
28
1.96
47366--47641
61
4.5
61
80
5
247
31
18
19
29
1.96
47366--47620
81
3.2
80
80
5
221
30
18
19
30
1.96
47617--47662
21
2.2
21
88
0
65
36
17
28
17
1.92
49024--49067
14
3.1
14
86
0
61
34
18
22
25
1.96
49018--49077
28
2.2
27
85
5
77
40
20
18
21
1.92
49175--49203
13
2.1
14
93
6
51
34
13
0
51
1.42
50013--50069
21
2.7
21
89
5
80
26
31
19
22
1.98
51175--51209
12
3.0
12
91
4
54
54
17
0
28
1.43
54737--54801
22
2.9
22
81
4
76
44
13
18
23
1.85
54838--54881
21
2.0
22
91
4
72
22
31
25
20
1.98
55770--55823
21
2.6
21
84
0
72
25
24
18
31
1.97
61793--61880
24
3.7
24
74
8
72
46
17
14
21
1.83
65283--65312
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!