genome.fa.s5334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005334.1 Hibiscus syriacus cultivar Beakdansim tig00012079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  253824

Tables:   1   2   

This is table  1  of  2  ( 137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557--655	24	4.2	24	73	6	85	22	14	17	46	1.83
2774--2826	13	3.8	13	75	18	52	16	49	16	16	1.81
2769--2858	18	5.2	18	75	19	84	16	47	18	16	1.82
2826--2880	8	7.5	8	80	19	75	14	38	25	21	1.92
2821--2852	13	2.5	13	100	0	64	15	46	25	12	1.81
2773--2852	31	2.6	30	88	2	124	16	47	20	16	1.83
2842--2881	7	5.4	7	91	8	62	12	35	27	25	1.92
2842--2880	15	2.6	15	100	0	78	12	35	25	25	1.92
5344--5443	24	4.2	24	74	5	94	22	14	17	47	1.82
8062--8115	24	2.2	24	90	0	81	24	16	20	38	1.92
10306--10350	23	2.0	23	86	0	63	26	28	24	20	1.99
10329--10632	149	2.0	149	98	0	590	35	20	16	27	1.94
11076--11107	15	2.2	14	94	5	55	0	18	0	81	0.70
11111--11263	68	2.2	68	90	0	234	17	27	26	28	1.98
11243--11285	21	2.0	21	86	0	59	16	25	27	30	1.97
12884--13010	33	3.8	33	86	4	184	43	18	22	15	1.88
12885--13017	66	2.0	66	94	0	230	42	18	21	17	1.90
16668--16789	20	6.8	19	66	20	66	42	19	24	13	1.87
16693--16789	33	2.9	33	92	1	158	40	22	25	11	1.87
16790--16834	19	2.4	19	84	0	63	8	13	24	53	1.68
17391--17443	20	2.7	20	90	0	79	26	20	26	26	1.99
17452--17505	20	2.7	20	97	0	99	25	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17392--17508	61	1.9	61	85	0	162	23	17	23	34	1.96
18181--18266	39	2.2	39	85	4	111	32	22	18	26	1.97
18181--18286	39	2.7	39	82	5	99	33	19	20	25	1.97
19187--19333	54	2.7	54	96	1	267	22	21	20	35	1.96
21815--21916	30	3.4	30	98	0	195	51	14	7	25	1.69
31012--31049	17	2.1	19	85	9	53	42	0	7	50	1.31
32437--32467	2	15.5	2	93	0	53	45	0	0	54	0.99
35251--35578	113	2.8	117	84	9	417	24	23	22	29	1.99
40831--40902	2	36.0	2	100	0	144	50	0	0	50	1.00
42643--42716	35	2.0	35	84	12	94	39	1	2	56	1.22
42722--42774	17	3.0	18	81	10	56	30	0	3	66	1.10
42733--42775	9	4.8	9	83	11	61	27	0	2	69	1.00
42735--42776	19	2.3	18	88	12	59	26	0	2	71	0.98
42733--42775	17	2.4	18	84	7	61	27	0	2	69	1.00
42735--42776	10	4.5	10	80	17	54	26	0	2	71	0.98
47377--47417	9	4.3	9	93	6	64	48	12	0	39	1.41
47833--47934	46	2.2	46	80	3	125	39	17	17	25	1.92
48030--48111	32	2.6	32	88	1	121	23	6	12	58	1.56
49270--49592	170	1.9	165	88	4	490	35	12	9	42	1.76
54230--54270	17	2.3	18	91	8	75	34	29	14	21	1.93
57916--57951	5	7.4	5	96	3	65	0	0	16	83	0.65
59698--59736	16	2.4	16	91	0	60	48	17	17	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66268--66313	22	2.0	22	83	8	56	56	8	0	34	1.30
71422--71469	20	2.4	21	83	13	57	41	22	31	4	1.73
71680--71735	24	2.3	24	93	0	94	37	12	21	28	1.90
80685--80719	2	17.5	2	100	0	70	51	0	0	48	1.00
81900--81944	2	22.5	2	95	0	81	48	0	0	51	1.00
86267--86348	24	3.5	24	86	3	121	26	17	20	35	1.95
86561--86591	2	15.5	2	100	0	62	48	0	0	51	1.00
89111--89180	21	3.3	21	87	0	113	14	42	21	21	1.88
89756--90139	193	2.0	191	91	1	624	35	15	10	38	1.83
93288--93327	21	1.9	21	89	0	62	15	40	22	22	1.91
93294--93337	21	2.1	21	83	8	54	15	43	18	22	1.88
93899--94466	189	3.0	189	95	1	996	35	16	10	38	1.82
99941--100102	80	2.0	80	97	2	308	27	22	27	23	1.99
108127--108187	27	2.3	27	82	0	77	54	24	4	16	1.62
108336--108447	21	5.3	21	89	0	143	25	38	23	13	1.91
108333--108489	42	3.7	42	81	5	131	26	35	23	14	1.93
108389--108478	21	4.3	21	84	6	103	27	31	26	14	1.95
108421--108489	21	3.3	21	88	8	88	24	31	24	18	1.98
108529--108589	21	2.9	21	82	0	68	37	32	19	9	1.85
116007--116055	22	2.1	23	82	14	57	48	6	0	44	1.27
117028--117080	27	2.0	27	84	0	70	58	18	5	16	1.58
117230--117312	21	4.0	21	95	0	148	24	39	24	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117304--117372	21	3.3	21	86	9	79	27	26	28	17	1.97
117227--117341	42	2.7	41	85	5	133	25	37	23	13	1.92
117320--117383	21	3.0	21	86	8	78	23	29	28	18	1.98
117423--117483	21	2.9	21	77	0	59	37	31	19	11	1.87
121149--121188	21	1.9	21	89	0	62	15	40	22	22	1.91
121155--121198	21	2.1	21	83	8	54	15	43	18	22	1.88
121762--122331	189	3.0	189	95	1	1005	35	16	10	38	1.82
126729--126777	22	2.1	23	82	14	57	48	6	0	44	1.27
136098--136158	27	2.3	27	82	0	77	54	24	4	16	1.62
136309--136420	21	5.3	21	89	0	143	25	38	23	13	1.91
136306--136462	42	3.7	42	81	5	131	26	35	23	14	1.93
136362--136451	21	4.3	21	84	6	103	27	31	26	14	1.95
136394--136462	21	3.3	21	88	8	88	24	31	24	18	1.98
136502--136562	21	2.9	21	82	0	68	37	32	19	9	1.85
143991--144039	22	2.1	23	82	14	57	48	6	0	44	1.27
145023--145075	27	2.0	27	84	0	70	58	18	5	16	1.58
145226--145308	21	4.0	21	95	0	148	24	39	24	12	1.89
145300--145368	21	3.3	21	86	9	79	27	26	28	17	1.97
145223--145337	42	2.7	41	85	5	133	25	37	23	13	1.92
145316--145379	21	3.0	21	86	8	78	23	29	28	18	1.98
145419--145479	21	2.9	21	77	0	59	37	31	19	11	1.87
150622--150715	21	4.5	21	87	0	134	15	40	21	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152828--152864	19	2.1	18	90	10	58	27	16	0	56	1.40
164788--165037	115	2.2	114	95	0	446	40	14	13	32	1.84
171897--171980	38	2.2	38	83	8	109	55	8	2	33	1.42
175045--175086	21	2.0	21	81	9	50	61	0	2	35	1.09
175450--175487	20	2.0	20	89	5	60	57	7	0	34	1.28
178173--178288	32	3.8	30	80	13	128	37	5	11	46	1.62
178164--178292	30	4.2	30	79	12	127	39	4	10	44	1.60
178164--178292	62	2.1	62	81	7	156	39	4	10	44	1.60
179253--179349	20	4.7	21	79	2	72	20	18	23	37	1.94
179274--179325	20	2.6	20	93	0	86	11	23	21	44	1.84
179869--179901	17	1.9	17	93	0	57	51	0	9	39	1.34
180437--180475	20	2.0	20	94	0	69	41	20	25	12	1.88
184816--184851	17	2.1	18	89	5	56	8	8	11	72	1.29
188981--189028	22	2.1	23	85	11	64	56	4	4	35	1.38
190542--190629	23	4.0	21	73	13	63	43	2	0	54	1.12
190583--190625	15	2.8	15	85	3	59	41	2	0	55	1.12
198269--198363	2	47.5	2	100	0	190	50	0	0	49	1.00
198437--198475	2	19.5	2	100	0	78	48	0	0	51	1.00
199132--199446	149	2.1	149	95	1	560	26	18	21	33	1.96
199414--199458	23	2.0	23	90	0	72	22	26	26	24	2.00
201115--201167	17	3.1	17	79	15	56	49	9	7	33	1.64
204191--204240	26	2.0	25	88	11	75	66	0	0	34	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204204--204244	13	3.2	13	82	0	55	70	0	0	29	0.87
206035--206101	27	2.5	27	95	0	125	37	14	17	29	1.91
207323--207394	31	2.5	31	80	8	89	31	13	8	45	1.74
207418--207457	19	2.1	19	85	0	53	17	15	32	35	1.91
210763--210899	60	2.3	60	81	9	147	35	13	13	37	1.84
211395--211511	60	2.0	60	86	3	164	37	16	16	29	1.90
214102--214140	18	2.2	18	95	0	69	30	17	15	35	1.91
218834--219067	118	2.0	118	92	0	389	40	13	12	33	1.82
221562--221875	149	2.1	148	91	1	495	35	21	16	26	1.95
222414--222459	2	23.0	2	100	0	92	50	0	0	50	1.00

Tables:   1   2