genome.fa.s5344.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005344.1 Hibiscus syriacus cultivar Beakdansim tig00012104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  640787

Tables:   1   2   3   

This is table  3  of  3  ( 321 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490958--491096	43	3.2	43	89	2	208	31	17	25	25	1.97
491281--491405	60	2.1	59	88	2	187	24	20	13	41	1.88
492541--492661	42	2.9	42	77	9	113	32	19	19	28	1.96
493002--493189	57	3.3	57	99	0	367	51	13	5	29	1.64
494213--494362	41	3.7	39	77	11	115	28	21	16	34	1.94
497679--497707	2	14.5	2	100	0	58	51	0	0	48	1.00
497815--497963	60	2.5	60	80	3	147	31	17	6	44	1.73
498089--498276	60	3.2	58	82	7	211	38	3	25	32	1.73
498176--498269	31	3.1	30	70	11	93	37	4	22	36	1.74
502754--502823	36	1.9	36	82	5	88	25	5	18	50	1.69
505390--505432	17	2.7	16	80	20	54	39	2	0	58	1.11
505390--505431	16	2.7	15	76	23	50	40	2	0	57	1.12
506415--506453	20	2.0	20	85	10	53	46	5	2	46	1.38
513009--513125	60	2.0	60	82	3	146	33	20	4	41	1.72
513951--513991	18	2.4	16	92	8	64	26	2	2	68	1.15
513947--513991	16	2.8	16	80	12	56	31	4	2	62	1.27
515323--515414	31	2.9	32	82	6	107	57	6	17	18	1.60
518100--518132	16	2.1	16	88	5	50	3	18	3	75	1.06
518454--518484	15	2.1	15	100	0	62	25	19	19	35	1.95
518844--518875	12	2.7	12	100	0	64	9	0	12	78	0.97
518899--518985	30	2.8	30	84	10	113	56	11	17	14	1.67
526077--526124	21	2.3	20	75	10	51	58	2	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526603--526657	24	2.3	24	96	0	101	43	7	3	45	1.49
529233--529344	23	5.2	22	64	23	69	22	8	20	48	1.77
529256--529321	19	3.3	19	66	22	53	25	7	18	48	1.74
529232--529356	42	3.0	42	97	0	232	23	8	20	48	1.76
531240--531400	64	2.5	65	83	7	202	34	19	19	26	1.96
532066--532162	31	3.2	30	77	13	99	26	19	20	32	1.97
532134--532242	57	1.9	57	92	0	182	16	20	31	32	1.95
532145--532243	29	3.4	29	78	8	121	17	21	31	30	1.96
533980--534022	23	2.0	23	81	9	54	55	2	6	34	1.39
539088--539135	20	2.3	21	89	3	71	75	6	4	14	1.16
539202--539238	11	3.4	11	85	14	58	81	8	2	8	0.97
539202--539246	20	2.1	21	92	8	74	77	8	4	8	1.10
539088--539328	124	1.9	123	83	6	308	51	8	4	35	1.53
540436--540474	17	2.4	17	95	4	71	51	5	0	43	1.24
541469--541560	43	2.2	43	88	2	132	48	2	5	43	1.38
547260--547299	21	1.9	21	94	0	71	32	30	15	22	1.94
547289--547334	20	2.3	20	85	7	58	43	19	15	21	1.87
547640--547735	40	2.4	40	92	0	165	22	17	18	40	1.91
547626--547757	20	6.5	21	75	13	100	21	16	21	39	1.92
548901--548952	21	2.5	20	81	6	59	67	3	0	28	1.08
551869--551944	37	2.1	37	89	0	116	27	22	14	35	1.93
553839--553888	24	2.1	24	88	0	73	22	30	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554742--554781	18	2.2	18	86	0	53	7	57	20	15	1.61
559378--559430	20	2.7	20	100	0	106	37	20	18	22	1.94
561029--561054	12	2.2	12	100	0	52	15	53	15	15	1.73
563561--563606	23	2.0	23	86	0	65	41	10	23	23	1.86
564356--564531	92	1.9	91	98	1	343	32	14	11	42	1.81
566843--566911	23	3.2	23	65	23	67	23	11	18	46	1.82
566832--566937	42	2.5	42	98	0	203	22	7	20	49	1.74
566837--566902	19	3.3	19	66	22	53	25	7	18	48	1.74
566856--566925	23	3.2	23	66	22	69	21	10	20	48	1.78
567177--567253	30	2.5	31	91	4	120	35	22	3	38	1.72
568219--568286	36	1.9	35	96	3	127	33	16	23	26	1.95
569343--569416	38	1.9	38	83	0	94	37	8	13	40	1.74
572912--573052	42	3.4	42	84	6	189	51	14	13	21	1.76
575283--575564	134	2.1	130	91	7	474	40	13	9	36	1.77
576067--576114	19	2.5	19	86	10	62	39	2	0	58	1.10
578646--579028	185	2.1	185	93	1	651	44	8	3	43	1.53
585128--585210	26	3.3	27	79	16	97	44	0	1	54	1.08
585163--585245	36	2.2	36	85	12	105	44	0	1	54	1.08
585110--585266	64	2.5	64	95	3	282	42	0	1	55	1.11
585481--585505	8	3.1	8	100	0	50	48	0	0	52	1.00
585943--586002	31	1.9	31	89	0	93	43	11	5	40	1.63
586218--586303	39	2.2	37	74	15	86	32	15	3	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586752--586830	3	26.3	3	100	0	158	65	0	0	34	0.93
587665--587702	3	12.7	3	100	0	76	65	0	0	34	0.93
589338--589373	2	18.0	2	100	0	72	0	0	50	50	1.00
590820--590875	24	2.3	24	96	0	103	58	5	25	10	1.52
595856--595899	21	2.1	21	83	8	54	54	11	4	29	1.56
615357--615418	13	4.7	13	72	18	56	74	3	4	17	1.13
615356--615425	9	7.9	9	72	15	56	74	2	4	18	1.11
615886--615918	2	16.5	2	100	0	66	51	0	0	48	1.00
619651--619690	19	2.1	19	95	0	71	25	5	37	32	1.77
619742--619795	18	2.9	18	75	5	54	38	0	1	59	1.08
627565--627591	14	1.9	14	100	0	54	51	0	0	48	1.00
629102--629180	39	2.0	39	92	0	131	30	27	5	36	1.78
630453--630639	80	2.3	82	90	4	297	19	12	26	42	1.86
630953--631082	42	3.1	42	90	0	206	35	26	24	13	1.93
638327--638422	41	2.3	41	80	5	104	28	6	22	42	1.78

Tables:   1   2   3

The End!